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Rpsa ribosomal protein SA [ Mus musculus (house mouse) ]

Gene ID: 16785, updated on 31-Jan-2019

Summary

Official Symbol
Rpsaprovided by MGI
Official Full Name
ribosomal protein SAprovided by MGI
Primary source
MGI:MGI:105381
See related
Ensembl:ENSMUSG00000032518
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MLR; P40; 67lr; Lamr; 67kDa; Lamr1; P40-3; P40-8; Lamrl1; AL022858
Expression
Ubiquitous expression in ovary adult (RPKM 874.9), thymus adult (RPKM 760.4) and 28 other tissues See more
Orthologs

Genomic context

See Rpsa in Genome Data Viewer
Location:
9 F4; 9 71.41 cM
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (120127766..120132369)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (120036884..120041487)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) receptor 8 Neighboring gene solute carrier family 25, member 38 Neighboring gene small nucleolar RNA, H/ACA box 62 Neighboring gene predicted gene 5922 Neighboring gene myelin-associated oligodendrocytic basic protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117921, MGC118614

Gene Ontology Provided by MGI

Function Evidence Code Pubs
laminin binding IDA
Inferred from Direct Assay
more info
PubMed 
laminin receptor activity IEA
Inferred from Electronic Annotation
more info
 
ribosome binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell-cell adhesion ISO
Inferred from Sequence Orthology
more info
 
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
basement membrane ISO
Inferred from Sequence Orthology
more info
 
collagen-containing extracellular matrix ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
glutamatergic synapse EXP
Inferred from Experiment
more info
PubMed 
glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
40S ribosomal protein SA
Names
37 kDa laminin receptor
37 kDa oncofetal antigen
37/67 kDa laminin receptor
37LRP
67 kDa laminin receptor
67LR
LBP/p40
LRP/LR
OFA/iLRP
P40-3, functional
P40-8, functional
lamR
laminin receptor 1 (67kD, ribosomal protein SA)
laminin-binding protein precursor p40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011029.4NP_035159.3  40S ribosomal protein SA

    See identical proteins and their annotated locations for NP_035159.3

    Status: VALIDATED

    Source sequence(s)
    AK011043, AK082935, AV586849, BC081461
    Consensus CDS
    CCDS23623.1
    UniProtKB/Swiss-Prot
    P14206
    Related
    ENSMUSP00000035105.5, ENSMUST00000035105.6
    Conserved Domains (1) summary
    PTZ00254
    Location:1250
    PTZ00254; 40S ribosomal protein SA; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    120127766..120132369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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