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SAXO1 stabilizer of axonemal microtubules 1 [ Homo sapiens (human) ]

Gene ID: 158297, updated on 17-Jun-2019

Summary

Official Symbol
SAXO1provided by HGNC
Official Full Name
stabilizer of axonemal microtubules 1provided by HGNC
Primary source
HGNC:HGNC:28566
See related
Ensembl:ENSG00000155875 MIM:616292
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM154A; C9orf138
Expression
Restricted expression toward testis (RPKM 15.1) See more
Orthologs

Genomic context

See SAXO1 in Genome Data Viewer
Location:
9p22.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (18927650..19049506, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (18927891..19033256, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ADAMTS like 1 Neighboring gene RAP1B, member of RAS oncogene family pseudogene 1 Neighboring gene uncharacterized LOC105375985 Neighboring gene proteasome 26S subunit, ATPase 3 pseudogene 1 Neighboring gene RNA, U6 small nuclear 264, pseudogene Neighboring gene small Cajal body-specific RNA 8 Neighboring gene Ras related GTP binding A Neighboring gene HAUS augmin like complex subunit 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35283, MGC35182

Gene Ontology Provided by GOA

Function Evidence Code Pubs
microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microtubule binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell projection organization IEA
Inferred from Electronic Annotation
more info
 
cellular response to cold IDA
Inferred from Direct Assay
more info
PubMed 
cold acclimation IDA
Inferred from Direct Assay
more info
PubMed 
microtubule anchoring IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein stabilization IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
axonemal microtubule IDA
Inferred from Direct Assay
more info
PubMed 
centriole IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centriole IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
sperm flagellum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sperm flagellum IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
stabilizer of axonemal microtubules 1
Names
4930500O09Rik
family with sequence similarity 154, member A
protein FAM154A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287049.1NP_001273978.1  stabilizer of axonemal microtubules 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon and it thus differs in the 5' UTR and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AI808568, AL158150, AW079914, BC033489, BM563230, DB236904
    Consensus CDS
    CCDS75819.1
    UniProtKB/Swiss-Prot
    Q8IYX7
    UniProtKB/TrEMBL
    F6S232
    Related
    ENSP00000438823.2, ENST00000542071.2
    Conserved Domains (1) summary
    pfam05217
    Location:23180
    STOP; STOP protein
  2. NM_001287050.2NP_001273979.1  stabilizer of axonemal microtubules 1 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon that results in early translation termination, compared to variant 1. The encoded isoform (c) is significantly shorter at the C-terminus, compared to isoform a.
    Source sequence(s)
    AI808568, AK057474, AL158150, AW079914, BC033489, DB035807
    Consensus CDS
    CCDS75820.1
    UniProtKB/Swiss-Prot
    Q8IYX7
    UniProtKB/TrEMBL
    B3KQ57, Q5VZT6
    Related
    ENSP00000369902.1, ENST00000380530.1
    Conserved Domains (1) summary
    pfam05217
    Location:465
    STOP; STOP protein
  3. NM_153707.4NP_714918.2  stabilizer of axonemal microtubules 1 isoform a

    See identical proteins and their annotated locations for NP_714918.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AI808568, AL158150, AW079914, BC033489, DB035807
    Consensus CDS
    CCDS6487.1
    UniProtKB/Swiss-Prot
    Q8IYX7
    Related
    ENSP00000369907.4, ENST00000380534.9
    Conserved Domains (1) summary
    pfam05217
    Location:4216
    STOP; STOP protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    18927650..19049506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024447428.1XP_024303196.1  stabilizer of axonemal microtubules 1 isoform X2

  2. XM_011517745.2XP_011516047.1  stabilizer of axonemal microtubules 1 isoform X2

    See identical proteins and their annotated locations for XP_011516047.1

    Conserved Domains (1) summary
    pfam05217
    Location:93250
    STOP; STOP protein
  3. XM_017014315.2XP_016869804.1  stabilizer of axonemal microtubules 1 isoform X4

    UniProtKB/TrEMBL
    F6S232
    Conserved Domains (1) summary
    pfam05217
    Location:23180
    STOP; STOP protein
  4. XM_011517744.1XP_011516046.1  stabilizer of axonemal microtubules 1 isoform X1

    Conserved Domains (1) summary
    pfam05217
    Location:112269
    STOP; STOP protein
  5. XM_017014314.1XP_016869803.1  stabilizer of axonemal microtubules 1 isoform X2

    Conserved Domains (1) summary
    pfam05217
    Location:93250
    STOP; STOP protein
  6. XM_011517746.2XP_011516048.1  stabilizer of axonemal microtubules 1 isoform X2

    See identical proteins and their annotated locations for XP_011516048.1

    Conserved Domains (1) summary
    pfam05217
    Location:93250
    STOP; STOP protein
  7. XM_011517747.2XP_011516049.1  stabilizer of axonemal microtubules 1 isoform X3

    Conserved Domains (1) summary
    pfam05217
    Location:26183
    STOP; STOP protein
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