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ZC2HC1B zinc finger C2HC-type containing 1B [ Homo sapiens (human) ]

Gene ID: 153918, updated on 1-Aug-2020

Summary

Official Symbol
ZC2HC1Bprovided by HGNC
Official Full Name
zinc finger C2HC-type containing 1Bprovided by HGNC
Primary source
HGNC:HGNC:21174
See related
Ensembl:ENSG00000118491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf94; FAM164B; dJ468K18.5
Expression
Restricted expression toward testis (RPKM 7.2) See more
Orthologs

Genomic context

See ZC2HC1B in Genome Data Viewer
Location:
6q24.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (143864474..143938343)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144185573..144259483)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 2 Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene PLAG1 like zinc finger 1 Neighboring gene FKBP prolyl isomerase 7 pseudogene Neighboring gene hydatidiform mole associated and imprinted

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: LTV1

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
zinc finger C2HC domain-containing protein 1B
Names
family with sequence similarity 164, member B
protein FAM164B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013623.3NP_001013645.1  zinc finger C2HC domain-containing protein 1B

    See identical proteins and their annotated locations for NP_001013645.1

    Status: VALIDATED

    Source sequence(s)
    BC146950, DB515645
    Consensus CDS
    CCDS47495.1
    UniProtKB/Swiss-Prot
    Q5TFG8
    Related
    ENSP00000237275.6, ENST00000237275.9
    Conserved Domains (1) summary
    pfam13913
    Location:1438
    zf-C2HC_2; zinc-finger of a C2HC-type

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    143864474..143938343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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