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Hnrnpk heterogeneous nuclear ribonucleoprotein K [ Mus musculus (house mouse) ]

Gene ID: 15387, updated on 8-Dec-2022

Summary

Official Symbol
Hnrnpkprovided by MGI
Official Full Name
heterogeneous nuclear ribonucleoprotein Kprovided by MGI
Primary source
MGI:MGI:99894
See related
Ensembl:ENSMUSG00000021546 AllianceGenome:MGI:99894
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KBBP; NOVA; Hnrpk
Summary
The protein encoded by this gene is a component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complex, and is a poly-cytosine binding protein (PCBP). It is found in multiple subcellular compartments including the nucleus, cytoplasm and mitochondria. This gene product is thought to interact with RNA, DNA, and protein, and is involved in multiple cellular processes, including transcription, chromatin remodeling, DNA damage response, signal transduction, mRNA splicing, export, and translation. Multiple transcript variants and protein isoforms exist, with some isoforms containing a unique C-terminus. There are four pseudogenes of this gene, found on chromosomes 2, 3, 7 and 13. [provided by RefSeq, Aug 2014]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 240.5), CNS E14 (RPKM 167.5) and 25 other tissues See more
Orthologs
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Genomic context

See Hnrnpk in Genome Data Viewer
Location:
13; 13 B1
Exon count:
19
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (58538946..58551157, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (58391132..58403343, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene kinesin family member 27 Neighboring gene microRNA 6369 Neighboring gene RIKEN cDNA 2210016F16 gene Neighboring gene microRNA 7-1 Neighboring gene RecQ mediated genome instability 1 Neighboring gene predicted gene, 33875 Neighboring gene predicted gene, 47918 Neighboring gene predicted gene, 40966

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102032

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATPase binding ISO
Inferred from Sequence Orthology
more info
 
enables C-rich single-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables actinin binding ISO
Inferred from Sequence Orthology
more info
 
enables cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables heat shock protein binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables lamin binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA CDS binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables pre-mRNA 3'-splice site binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
enables ribonucleoprotein complex binding ISO
Inferred from Sequence Orthology
more info
 
enables single-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to forskolin ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to insulin stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cerebral cortex development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in modulation of chemical synaptic transmission ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of branching morphogenesis of a nerve ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of protein binding ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in ovarian follicle development ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of RNA splicing ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of dendrite extension ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of dendritic spine development ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of long-term synaptic potentiation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of positive regulation of low-density lipoprotein receptor activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of myelination ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein localization to cell surface ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of positive regulation of receptor-mediated endocytosis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of synapse maturation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of synaptic transmission ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of regulation of low-density lipoprotein particle clearance ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of postsynapse organization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in axon terminus ISO
Inferred from Sequence Orthology
more info
 
part_of catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
located_in cell cortex ISO
Inferred from Sequence Orthology
more info
 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in chromatin ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in dendritic spine ISO
Inferred from Sequence Orthology
more info
 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in myelin sheath ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
part_of protein-DNA complex ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
heterogeneous nuclear ribonucleoprotein K

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301340.1NP_001288269.1  heterogeneous nuclear ribonucleoprotein K isoform 1

    See identical proteins and their annotated locations for NP_001288269.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same isoform (1).
    Source sequence(s)
    AK011428, AK160615, AV367088, BC089328, BE993983
    Consensus CDS
    CCDS79199.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5R1C6, A0A8C6HP39, Q5FWJ5
    Related
    ENSMUSP00000153253.2, ENSMUST00000224182.2
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  2. NM_001301341.1NP_001288270.1  heterogeneous nuclear ribonucleoprotein K isoform 1

    See identical proteins and their annotated locations for NP_001288270.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Variants 1, 2, and 3 encode the same isoform (1).
    Source sequence(s)
    AK078777, AV367088, BC089328, BE993983
    Consensus CDS
    CCDS79199.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5R1C6, A0A8C6HP39, Q5FWJ5
    Related
    ENSMUSP00000112104.3, ENSMUST00000116403.9
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  3. NM_001301343.1NP_001288272.1  heterogeneous nuclear ribonucleoprotein K isoform 1

    See identical proteins and their annotated locations for NP_001288272.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same isoform (1).
    Source sequence(s)
    AK166927, AV367088, BC089328, BE993983, BY794631
    Consensus CDS
    CCDS79199.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5R1C6, A0A8C6HP39, Q5FWJ5
    Related
    ENSMUSP00000152935.2, ENSMUST00000225674.2
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  4. NM_001301344.1NP_001288273.1  heterogeneous nuclear ribonucleoprotein K isoform 3

    See identical proteins and their annotated locations for NP_001288273.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks an in-frame exon compared to variant 1. It encodes isoform 3 which is shorter than isoform 1.
    Source sequence(s)
    AK011428, AK051313, AK151689, AK160615, AV367088, BC089328, BE993983
    Consensus CDS
    CCDS79198.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5QY65, A0A8C6HQH2, B2M1R6, Q3U9Q3, Q5FWJ5
    Related
    ENSMUSP00000135647.2, ENSMUST00000177019.8
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  5. NM_001301345.1NP_001288274.1  heterogeneous nuclear ribonucleoprotein K isoform 4

    See identical proteins and their annotated locations for NP_001288274.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) lacks an in-frame exon and uses an alternative splice site in the 3' terminal exon, which results in a frameshift, compared to variant 1. It encodes isoform 4 which is shorter and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK011428, AK051313, AV367088, BC089328, BE993983
    Consensus CDS
    CCDS79197.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5QVQ0, Q5FWJ5
    Related
    ENSMUSP00000135354.2, ENSMUST00000176207.8
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  6. NM_001360490.1NP_001347419.1  heterogeneous nuclear ribonucleoprotein K isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC154437
    Consensus CDS
    CCDS49283.1
    UniProtKB/TrEMBL
    A0A6P5QVR4, A0A8C6HMV5
    Related
    ENSMUSP00000135833.2, ENSMUST00000177497.8
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  7. NM_001360491.1NP_001347420.1  heterogeneous nuclear ribonucleoprotein K isoform 5

    Status: REVIEWED

    Source sequence(s)
    AC154437
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:382455
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  8. NM_001360493.1NP_001347422.1  heterogeneous nuclear ribonucleoprotein K isoform 6

    Status: REVIEWED

    Source sequence(s)
    AC154437
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:382455
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  9. NM_001360494.1NP_001347423.1  heterogeneous nuclear ribonucleoprotein K isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC154437
    Consensus CDS
    CCDS79198.1
    UniProtKB/TrEMBL
    A0A6P5QY65, A0A8C6HQH2, B2M1R6
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  10. NM_001360495.1NP_001347424.1  heterogeneous nuclear ribonucleoprotein K isoform 4

    Status: REVIEWED

    Source sequence(s)
    AC154437
    Consensus CDS
    CCDS79197.1
    UniProtKB/TrEMBL
    A0A6P5QVQ0
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  11. NM_025279.3NP_079555.1  heterogeneous nuclear ribonucleoprotein K isoform 2

    See identical proteins and their annotated locations for NP_079555.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses an alternative splice site in the 3' terminal exon, which results in a frameshift, compared to variant 1. It encodes isoform 2 which has a distinct and shorter C-terminus compared to isoform 1.
    Source sequence(s)
    AK011428, AV367088, BC089328, BE993983
    Consensus CDS
    CCDS49283.1
    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5QVR4, A0A8C6HMV5, Q5FWJ5
    Related
    ENSMUSP00000039269.8, ENSMUST00000043269.14
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

RNA

  1. NR_153501.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC154437
  2. NR_153502.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC154437
  3. NR_153503.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC154437
  4. NR_153504.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC154437

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    58538946..58551157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517103.5XP_006517166.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_006517166.1

    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5R1C6, A0A8C6HP39, Q5FWJ5
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
  2. XM_006517104.4XP_006517167.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_006517167.1

    UniProtKB/Swiss-Prot
    P61979
    UniProtKB/TrEMBL
    A0A6P5R1C6, A0A8C6HP39, Q5FWJ5
    Conserved Domains (4) summary
    pfam08067
    Location:443
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins