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NUDT16L2P nudix hydrolase 16 like 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 152195, updated on 23-Nov-2021

Summary

Official Symbol
NUDT16L2Pprovided by HGNC
Official Full Name
nudix hydrolase 16 like 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:27189
See related
Ensembl:ENSG00000246082
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NUDT16P; NUDT16P1
Expression
Broad expression in thyroid (RPKM 6.6), small intestine (RPKM 4.3) and 23 other tissues See more
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Genomic context

See NUDT16L2P in Genome Data Viewer
Location:
3q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (131361845..131365122)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (131080689..131083966)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 11 Neighboring gene uncharacterized LOC107986024 Neighboring gene RNA, U6 small nuclear 726, pseudogene Neighboring gene NUDT16 divergent transcript Neighboring gene uncharacterized LOC107986025 Neighboring gene nudix hydrolase 16

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1
  • nudix hydrolase 16 pseudogene 1
  • nudix-type motif 16 pseudogene

Clone Names

  • FLJ20525

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002949.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' exon and lacks an alternate segment in the 5' region, compared to variant 1.
    Source sequence(s)
    AC010210, AK000532, AK297126
    Related
    ENST00000499077.2
  2. NR_027766.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK000532, BC015593, DA541046

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    131361845..131365122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_194289.1: Suppressed sequence

    Description
    NM_194289.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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