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LINC00309 long intergenic non-protein coding RNA 309 [ Homo sapiens (human) ]

Gene ID: 150992, updated on 10-Oct-2023

Summary

Official Symbol
LINC00309provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 309provided by HGNC
Primary source
HGNC:HGNC:25279
See related
Ensembl:ENSG00000230923 AllianceGenome:HGNC:25279
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00309
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00309 in Genome Data Viewer
Location:
2p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64185078..64205485, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64192763..64213169, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (64412212..64432619, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907774 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11546 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:64297588-64298088 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:64303262-64303843 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:64303844-64304424 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:64306933-64308132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15881 Neighboring gene MPRA-validated peak3731 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15882 Neighboring gene pellino E3 ubiquitin protein ligase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11547 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11549 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11551 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15883 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15884 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64454691-64455400 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64455401-64456109 Neighboring gene uncharacterized LOC100507006 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:64479283-64479984 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64479985-64480686 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:64484195-64484895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15887 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64499254-64499870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15891 Neighboring gene uncharacterized LOC105374769

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033837.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL137337
    Related
    ENST00000431020.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    64185078..64205485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    64192763..64213169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)