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SATB2-AS1 SATB2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 150538, updated on 11-Jun-2021

Summary

Official Symbol
SATB2-AS1provided by HGNC
Official Full Name
SATB2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:26490
See related
Ensembl:ENSG00000225953
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 4.3), appendix (RPKM 0.8) and 2 other tissues See more
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Genomic context

See SATB2-AS1 in Genome Data Viewer
Location:
2q33.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (199468098..199472758)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (200332821..200337481)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 147 pseudogene Neighboring gene SATB homeobox 2 Neighboring gene Sharpr-MPRA regulatory region 6083 Neighboring gene long intergenic non-protein coding RNA 1877 Neighboring gene selenophosphate synthetase 1 pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • SATB2 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ32063, MGC126831

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK123639, BC035902
    Related
    ENST00000450728.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    199468098..199472758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153031.1: Suppressed sequence

    Description
    NM_153031.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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