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POGLUT3 protein O-glucosyltransferase 3 [ Homo sapiens (human) ]

Gene ID: 143888, updated on 5-Jan-2020

Summary

Official Symbol
POGLUT3provided by HGNC
Official Full Name
protein O-glucosyltransferase 3provided by HGNC
Primary source
HGNC:HGNC:28496
See related
Ensembl:ENSG00000178202 MIM:618503
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KDELC2
Expression
Ubiquitous expression in endometrium (RPKM 18.2), ovary (RPKM 17.7) and 25 other tissues See more
Orthologs

Genomic context

See POGLUT3 in Genome Data Viewer
Location:
11q22.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (108472116..108498384, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (108342832..108369169, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene nuclear protein, coactivator of histone transcription Neighboring gene ATM serine/threonine kinase Neighboring gene chromosome 11 open reading frame 65 Neighboring gene uncharacterized LOC112267909 Neighboring gene uncharacterized LOC101928561 Neighboring gene exophilin 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC33424

Gene Ontology Provided by GOA

Function Evidence Code Pubs
UDP-glucosyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
UDP-xylosyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
glucosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein O-linked glycosylation via serine IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein O-glucosyltransferase 3
Names
KDEL (Lys-Asp-Glu-Leu) containing 2
KDEL motif containing 2
KDEL motif-containing protein 2
protein O-xylosyltransferase POGLUT3
NP_001350431.1
NP_001350432.1
NP_714916.3
XP_011540923.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363502.2NP_001350431.1  protein O-glucosyltransferase 3 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AP005718
    Conserved Domains (2) summary
    pfam00630
    Location:27131
    Filamin; Filamin/ABP280 repeat
    cl23835
    Location:228347
    Glyco_transf_90; Glycosyl transferase family 90
  2. NM_001363503.2NP_001350432.1  protein O-glucosyltransferase 3 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AP005718
    Conserved Domains (2) summary
    pfam00630
    Location:27131
    Filamin; Filamin/ABP280 repeat
    cl23835
    Location:151450
    Glyco_transf_90; Glycosyl transferase family 90
  3. NM_153705.5NP_714916.3  protein O-glucosyltransferase 3 isoform 1 precursor

    See identical proteins and their annotated locations for NP_714916.3

    Status: VALIDATED

    Source sequence(s)
    AF533708, AI628702, BC036526
    Consensus CDS
    CCDS41711.1
    UniProtKB/Swiss-Prot
    Q7Z4H8
    UniProtKB/TrEMBL
    A0A024R3C4
    Related
    ENSP00000315386.5, ENST00000323468.10
    Conserved Domains (3) summary
    smart00557
    Location:29133
    IG_FLMN; Filamin-type immunoglobulin domains
    pfam00630
    Location:27131
    Filamin; Filamin/ABP280 repeat
    cl23835
    Location:151485
    Glyco_transf_90; Glycosyl transferase family 90

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    108472116..108498384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011542621.2XP_011540923.1  protein O-glucosyltransferase 3 isoform X1

    Related
    ENSP00000413429.2, ENST00000434945.6
    Conserved Domains (2) summary
    pfam00630
    Location:45117
    Filamin; Filamin/ABP280 repeat
    cl23835
    Location:137471
    Glyco_transf_90; Glycosyl transferase family 90
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