U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Acsl1 acyl-CoA synthetase long-chain family member 1 [ Mus musculus (house mouse) ]

Gene ID: 14081, updated on 12-Feb-2024

Summary

Official Symbol
Acsl1provided by MGI
Official Full Name
acyl-CoA synthetase long-chain family member 1provided by MGI
Primary source
MGI:MGI:102797
See related
Ensembl:ENSMUSG00000018796 AllianceGenome:MGI:102797
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Acs; Acas; FACS; Acas1; Facl2; LACS1; LACS 1
Summary
The protein encoded by this gene belongs to a family of acyl coenzyme A synthetase proteins, which convert long chain fatty acids to acyl CoA products via an ATP-dependent pathway. This enzyme is enriched in heart, liver and adipose tissue, where it functions in lipid synthesis and mitochondrial and peroxisomal beta-oxidation. In addition, it is expressed in monocytes and macrophages where it appears to have a functionally distinct role in mediating inflammatory and innate immune responses. A pseudogene of this gene is found on chromosome 5. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]
Expression
Biased expression in liver E18 (RPKM 94.6), subcutaneous fat pad adult (RPKM 79.5) and 13 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Acsl1 in Genome Data Viewer
Location:
8 B1.1; 8 26.36 cM
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (46924214..46989088)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (46471037..46536051)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr8:47396583-47396884 Neighboring gene predicted gene, 39168 Neighboring gene STARR-seq mESC enhancer starr_21381 Neighboring gene predicted gene, 30931 Neighboring gene STARR-seq mESC enhancer starr_21383 Neighboring gene STARR-seq mESC enhancer starr_21384 Neighboring gene STARR-positive B cell enhancer ABC_E2261 Neighboring gene STARR-positive B cell enhancer ABC_E6635 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:47637172-47637355 Neighboring gene centromere protein U Neighboring gene primase and polymerase (DNA-directed) Neighboring gene predicted gene 45607

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables acetate-CoA ligase (ADP-forming) activity IEA
Inferred from Electronic Annotation
more info
 
enables arachidonate-CoA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables arachidonate-CoA ligase activity ISO
Inferred from Sequence Orthology
more info
 
enables ligase activity IEA
Inferred from Electronic Annotation
more info
 
enables long-chain fatty acid-CoA ligase activity ISO
Inferred from Sequence Orthology
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables oleoyl-CoA ligase activity ISO
Inferred from Sequence Orthology
more info
 
enables phytanate-CoA ligase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein serine/threonine kinase activator activity IGI
Inferred from Genetic Interaction
more info
PubMed 
enables protein serine/threonine kinase activator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within adiponectin-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in fatty acid metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in fatty acid transport ISO
Inferred from Sequence Orthology
more info
 
involved_in lipid biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in long-chain fatty acid import into cell ISO
Inferred from Sequence Orthology
more info
 
involved_in long-chain fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in long-chain fatty acid metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in long-chain fatty-acyl-CoA biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in long-chain fatty-acyl-CoA biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cold-induced thermogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of long-chain fatty acid import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in response to organic substance ISO
Inferred from Sequence Orthology
more info
 
involved_in triglyceride biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in very long-chain fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in very long-chain fatty acid metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in xenobiotic catabolic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
long-chain-fatty-acid--CoA ligase 1
Names
acetate-CoA ligase
acetyl-CoA synthetase
acetyl-Coenzyme A synthetase 1 (ADP forming)
arachidonate--CoA ligase
fatty acid Coenzyme A ligase, long chain 2
long-chain acyl-CoA synthetase 1
phytanate--CoA ligase
NP_001289092.1
NP_001411721.1
NP_001411722.1
NP_001411723.1
NP_032007.2
XP_006509325.2
XP_006509328.1
XP_006509329.1
XP_017168052.1
XP_030099145.1
XP_036009645.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302163.2NP_001289092.1  long-chain-fatty-acid--CoA ligase 1 isoform 1

    See identical proteins and their annotated locations for NP_001289092.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes isoform 1.
    Source sequence(s)
    AC119267, AC138367
    Consensus CDS
    CCDS22291.1
    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Related
    ENSMUSP00000106001.2, ENSMUST00000110372.9
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  2. NM_001424792.1NP_001411721.1  long-chain-fatty-acid--CoA ligase 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC119267, AC138367
    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
  3. NM_001424793.1NP_001411722.1  long-chain-fatty-acid--CoA ligase 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC119267, AC138367
  4. NM_001424794.1NP_001411723.1  long-chain-fatty-acid--CoA ligase 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC119267, AC138367
  5. NM_007981.5NP_032007.2  long-chain-fatty-acid--CoA ligase 1 isoform 1

    See identical proteins and their annotated locations for NP_032007.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a distinct 5' UTR and represents use of an alternate promoter compared to variant 1. Variants 1, 2, and 3 encode the same isoform (1).
    Source sequence(s)
    AC119267, AC138367
    Consensus CDS
    CCDS22291.1
    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Related
    ENSMUSP00000034046.6, ENSMUST00000034046.13
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    46924214..46989088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312563.3XP_017168052.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  2. XM_006509266.4XP_006509329.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    See identical proteins and their annotated locations for XP_006509329.1

    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  3. XM_006509265.4XP_006509328.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    See identical proteins and their annotated locations for XP_006509328.1

    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  4. XM_030243285.2XP_030099145.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

    UniProtKB/TrEMBL
    D3Z041
    Related
    ENSMUSP00000106000.2, ENSMUST00000110371.8
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  5. XM_006509262.4XP_006509325.2  long-chain-fatty-acid--CoA ligase 1 isoform X1

    See identical proteins and their annotated locations for XP_006509325.2

    UniProtKB/Swiss-Prot
    P41216, Q6GTG6, Q9DBK5
    Conserved Domains (1) summary
    cd05927
    Location:117695
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
  6. XM_036153752.1XP_036009645.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    Conserved Domains (1) summary
    cl17068
    Location:1370
    AFD_class_I; Adenylate forming domain, Class I superfamily

RNA

  1. XR_004934769.1 RNA Sequence