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CCDC26 CCDC26 long non-coding RNA [ Homo sapiens (human) ]

Gene ID: 137196, updated on 10-May-2020

Summary

Official Symbol
CCDC26provided by HGNC
Official Full Name
CCDC26 long non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:28416
See related
Ensembl:ENSG00000229140 MIM:613040
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RAM
Expression
Low expression observed in reference dataset See more

Genomic context

See CCDC26 in Genome Data Viewer
Location:
8q24.21
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (129351694..129680239, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 977 Neighboring gene RN7SK pseudogene 206 Neighboring gene microRNA 3686 Neighboring gene VISTA enhancer hs1709 Neighboring gene mitochondrial translational release factor 1 like pseudogene 2 Neighboring gene gasdermin C Neighboring gene ribosomal protein L15 pseudogene 12 Neighboring gene CYFIP related Rac1 interactor B

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000008.11 Chromosome 8 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Chromosome 7p11.2 (EGFR) variation influences glioma risk.
NHGRI GWA Catalog
Genome-wide association analyses identify variants in developmental genes associated with hypospadias.
NHGRI GWA Catalog
Genome-wide association study identifies five susceptibility loci for glioma.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CASC8/CCDC26 fusion
  • PVT1/CCDC26 fusion
  • coiled-coil domain containing 26
  • retinoic acid modulator

Clone Names

  • MGC27434

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130917.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC013300, BC070152
    Related
    ENST00000446592.7
  2. NR_130918.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains an alternate 5' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC013300, BC026098, BC070152, BG532915
    Related
    ENST00000523151.5
  3. NR_130919.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and contains two alternate 5' exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC013300, BC070152, BG393734, BG532915
    Related
    ENST00000667643.1
  4. NR_130920.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons and contains two alternate 5' exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC013300, BC070152, BG532915, BU186641
    Related
    ENST00000661447.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    129351694..129680239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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