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smek1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [ Tachysurus vachellii ]

Gene ID: 132854277, updated on 3-Apr-2024

Summary

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Gene symbol
smek1
Gene description
SMEK homolog 1, suppressor of mek1 (Dictyostelium)
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus vachellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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See smek1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_11 current HZAU_Pvac_v1 (GCF_030014155.1) 12 NC_083471.1 (6429227..6445899)

Chromosome 12 - NC_083471.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, subfamily F, member 1a Neighboring gene ERH mRNA splicing and mitosis factor Neighboring gene MYCN proto-oncogene, bHLH transcription factor Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083471.1 Chromosome 12 Reference HZAU_Pvac_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein phosphatase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 4 regulatory subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014155.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_Pvac_v1 Primary Assembly

Genomic

  1. NC_083471.1 Reference HZAU_Pvac_v1 Primary Assembly

    Range
    6429227..6445899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060882551.1 → XP_060738534.1  serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0AA88MZ58

  2. XM_060882552.1 → XP_060738535.1  serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform X2

Nucleotide Protein
Heading Accession and Version

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