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Crp C-reactive protein, pentraxin-related [ Mus musculus (house mouse) ]

Gene ID: 12944, updated on 9-May-2024

Summary

Official Symbol
Crpprovided by MGI
Official Full Name
C-reactive protein, pentraxin-relatedprovided by MGI
Primary source
MGI:MGI:88512
See related
Ensembl:ENSMUSG00000037942 AllianceGenome:MGI:88512
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable several functions, including cholesterol binding activity; complement component C1q complex binding activity; and low-density lipoprotein particle binding activity. Predicted to be involved in several processes, including complement activation, classical pathway; regulation of gene expression; and regulation of superoxide anion generation. Predicted to act upstream of or within vasoconstriction. Predicted to be located in filopodium and growth cone. Predicted to be active in extracellular space. Is expressed in embryo and liver. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in liver E18 (RPKM 127.7), liver adult (RPKM 108.0) and 2 other tissues See more
Orthologs
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Genomic context

See Crp in Genome Data Viewer
Location:
1 H3; 1 80.13 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (172525623..172527533)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (172698056..172699966)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr1:174563024-174563325 Neighboring gene predicted gene, 35601 Neighboring gene STARR-seq mESC enhancer starr_03070 Neighboring gene high mobility group protein B1-like Neighboring gene STARR-seq mESC enhancer starr_03071 Neighboring gene STARR-seq mESC enhancer starr_03072 Neighboring gene predicted gene, 38051 Neighboring gene Fc receptor, IgE, high affinity I, alpha polypeptide pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding ISO
Inferred from Sequence Orthology
more info
 
enables cholesterol binding ISO
Inferred from Sequence Orthology
more info
 
enables complement component C1q complex binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables complement component C1q complex binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables low-density lipoprotein particle binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables low-density lipoprotein particle binding ISO
Inferred from Sequence Orthology
more info
 
enables low-density lipoprotein particle receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within acute-phase response IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to calcium ion ISO
Inferred from Sequence Orthology
more info
 
involved_in complement activation, classical pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of lipid storage ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of macrophage derived foam cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of mononuclear cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of superoxide anion generation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of dendrite development ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of nitric oxide biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of superoxide anion generation ISO
Inferred from Sequence Orthology
more info
 
involved_in protein polymerization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of interleukin-8 production ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of low-density lipoprotein particle clearance ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within vasoconstriction ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in filopodium ISO
Inferred from Sequence Orthology
more info
 
located_in growth cone ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
C-reactive protein
Names
C-reactive protein, petaxin related

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007768.4NP_031794.3  C-reactive protein precursor

    See identical proteins and their annotated locations for NP_031794.3

    Status: VALIDATED

    Source sequence(s)
    AC131177
    Consensus CDS
    CCDS35787.1
    UniProtKB/Swiss-Prot
    E9PZ20, P14847
    UniProtKB/TrEMBL
    I6L966
    Related
    ENSMUSP00000044665.4, ENSMUST00000038495.5
    Conserved Domains (1) summary
    pfam00354
    Location:26221
    Pentaxin; Pentaxin family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    172525623..172527533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)