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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012059.2 RefSeqGene
- Range
-
6053..288861
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_233
mRNA and Protein(s)
-
NM_001287758.2 → NP_001274687.1 collagen alpha-6(IV) chain isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest protein (isoform 3).
- Source sequence(s)
-
AL031177, AL136080, AW082083, BG680578, CA396616, CA489342, CB050016, CN313332, CN313341, CN313343, CN313347, CN313351, CX872164, DA748513
- Consensus CDS
-
CCDS76010.1
- UniProtKB/TrEMBL
-
A8MXH5
- Related
- ENSP00000378340.3, ENST00000394872.6
- Conserved Domains (2) summary
-
- pfam01391
Location:680 → 739
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1592 → 1704
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
NM_001287759.2 → NP_001274688.1 collagen alpha-6(IV) chain isoform 4 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks several alternate in-frame exons compared to variant 3. The resulting protein (isoform 4) is shorter compared to isoform 3.
- Source sequence(s)
-
AL136080, BC000874, BC144669, CB050016, CN313332, CN313347, DB260304, EU182215
- Consensus CDS
-
CCDS76009.1
- UniProtKB/TrEMBL
- A0A087WZY5, A8VPY0, B7ZMM7
- Related
- ENSP00000482970.1, ENST00000621266.4
- Conserved Domains (2) summary
-
- pfam01391
Location:663 → 722
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1551 → 1663
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
NM_001287760.2 → NP_001274689.1 collagen alpha-6(IV) chain isoform 5 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks several alternate in-frame exons compared to variant 3. The resulting protein (isoform 5) is shorter compared to isoform 3.
- Source sequence(s)
-
AL034369, AL136080, BC000874, BC140855, CB050016, DB260304, U04845
- Consensus CDS
-
CCDS76008.1
- UniProtKB/Swiss-Prot
-
Q14031
- UniProtKB/TrEMBL
- B2RTX6, F5H3Q5
- Related
- ENSP00000445236.1, ENST00000538570.5
- Conserved Domains (2) summary
-
- pfam01391
Location:663 → 722
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1518 → 1630
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
NM_001847.4 → NP_001838.2 collagen alpha-6(IV) chain isoform A precursor
See identical proteins and their annotated locations for NP_001838.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (A) utilizes a different alternative exon in the 5' UTR and coding region, exon 1A, which results in use of an alternate upstream translation start, compared to variant 3. The resulting protein (isoform A) has a distinct and shorter N-terminus, compared to isoform 3.
- Source sequence(s)
-
AL031177, AL136080, CB050016, U04845
- Consensus CDS
-
CCDS14541.1
- UniProtKB/Swiss-Prot
-
Q14031
- Related
- ENSP00000361290.4, ENST00000372216.8
- Conserved Domains (2) summary
-
- pfam01391
Location:664 → 723
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1576 → 1688
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
NM_033641.4 → NP_378667.1 collagen alpha-6(IV) chain isoform B precursor
See identical proteins and their annotated locations for NP_378667.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (B) utilizes the same 5' exon as variant 3 (exon 1B) but lacks several alternate in-frame exons. The resulting protein (isoform B) is shorter compared to isoform 3.
- Source sequence(s)
-
AL136080, BF726518, BQ331638, CB050016, CN313347, D21337, U04845
- Consensus CDS
-
CCDS14542.1
- UniProtKB/Swiss-Prot
-
Q14031
- Related
- ENSP00000334733.7, ENST00000334504.12
- Conserved Domains (2) summary
-
- pfam01391
Location:663 → 722
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1575 → 1687
- C4; C-terminal tandem repeated domain in type 4 procollagen
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p13 Primary Assembly
- Range
-
108155607..108439493 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006724617.3 → XP_006724680.1 collagen alpha-6(IV) chain isoform X1
- Conserved Domains (2) summary
-
- pfam01391
Location:681 → 740
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1593 → 1705
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
XM_011530852.2 → XP_011529154.1 collagen alpha-6(IV) chain isoform X2
- Conserved Domains (2) summary
-
- pfam01391
Location:681 → 740
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1569 → 1681
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
XM_011530853.3 → XP_011529155.1 collagen alpha-6(IV) chain isoform X3
- Conserved Domains (2) summary
-
- pfam01391
Location:653 → 712
- Collagen; Collagen triple helix repeat (20 copies)
- pfam01413
Location:1565 → 1677
- C4; C-terminal tandem repeated domain in type 4 procollagen
-
XM_011530854.2 → XP_011529156.1 collagen alpha-6(IV) chain isoform X4
- Conserved Domains (1) summary
-
- pfam01391
Location:681 → 740
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
XR_001755650.1 RNA Sequence