U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cox6c cytochrome c oxidase subunit 6C [ Mus musculus (house mouse) ]

Gene ID: 12864, updated on 5-Mar-2024

Summary

Official Symbol
Cox6cprovided by MGI
Official Full Name
cytochrome c oxidase subunit 6Cprovided by MGI
Primary source
MGI:MGI:104614
See related
Ensembl:ENSMUSG00000014313 AllianceGenome:MGI:104614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable cytochrome-c oxidase activity. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human COX6C (cytochrome c oxidase subunit 6C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 387.4), bladder adult (RPKM 339.2) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Cox6c in Genome Data Viewer
Location:
15 B3.1; 15 14.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (35932122..35938392, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (35931976..35938246, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 13B Neighboring gene RIKEN cDNA 9130002K18 gene Neighboring gene predicted gene, 41292 Neighboring gene STARR-seq mESC enhancer starr_38348 Neighboring gene STARR-seq mESC enhancer starr_38349 Neighboring gene STARR-seq mESC enhancer starr_38350 Neighboring gene STARR-seq mESC enhancer starr_38351 Neighboring gene regulator of G-protein signalling 22 Neighboring gene STARR-seq mESC enhancer starr_38352 Neighboring gene heterogeneous nuclear ribonucleoprotein C pseudogene Neighboring gene predicted gene, 22979 Neighboring gene F-box protein 43

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
cytochrome c oxidase subunit 6C
Names
cytochrome c oxidase polypeptide VIc
cytochrome c oxidase subunit VIc
NP_444301.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053071.2NP_444301.1  cytochrome c oxidase subunit 6C

    See identical proteins and their annotated locations for NP_444301.1

    Status: VALIDATED

    Source sequence(s)
    AK013459, BC094413, BY100624
    Consensus CDS
    CCDS27424.1
    UniProtKB/Swiss-Prot
    Q52KC6, Q9CPQ1
    Related
    ENSMUSP00000014457.9, ENSMUST00000014457.15
    Conserved Domains (1) summary
    pfam02937
    Location:675
    COX6C; Cytochrome c oxidase subunit VIc

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    35932122..35938392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)