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C1orf131 chromosome 1 open reading frame 131 [ Homo sapiens (human) ]

Gene ID: 128061, updated on 11-Sep-2019

Summary

Official Symbol
C1orf131provided by HGNC
Official Full Name
chromosome 1 open reading frame 131provided by HGNC
Primary source
HGNC:HGNC:25332
See related
Ensembl:ENSG00000143633
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in duodenum (RPKM 9.8), small intestine (RPKM 8.3) and 25 other tissues See more
Orthologs

Genomic context

See C1orf131 in Genome Data Viewer
Location:
1q42.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (231223765..231241175, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (231359509..231376933, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A like 4C pseudogene Neighboring gene tripartite motif containing 67 Neighboring gene uncharacterized LOC149373 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene uncharacterized LOC112268256 Neighboring gene RNA, 5S ribosomal pseudogene 80

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp547B1713

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
Component Evidence Code Pubs
chromosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C1orf131

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001300830.2NP_001287759.1  uncharacterized protein C1orf131 isoform b

    See identical proteins and their annotated locations for NP_001287759.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (b) is shorter than isoform a.
    Source sequence(s)
    AK055124, BC036800
    Consensus CDS
    CCDS73049.1
    UniProtKB/Swiss-Prot
    Q8NDD1
    Related
    ENSP00000355611.3, ENST00000366651.7
    Conserved Domains (1) summary
    pfam15375
    Location:135251
    DUF4602; Domain of unknown function (DUF4602)
  2. NM_152379.4NP_689592.2  uncharacterized protein C1orf131 isoform a

    See identical proteins and their annotated locations for NP_689592.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represnts the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK055124, BC053609
    Consensus CDS
    CCDS1591.2
    UniProtKB/Swiss-Prot
    Q8NDD1
    Related
    ENSP00000355609.2, ENST00000366649.7
    Conserved Domains (1) summary
    pfam15375
    Location:135252
    DUF4602; Domain of unknown function (DUF4602)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    231223765..231241175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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