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C1orf122 chromosome 1 open reading frame 122 [ Homo sapiens (human) ]

Gene ID: 127687, updated on 11-Jun-2021

Summary

Official Symbol
C1orf122provided by HGNC
Official Full Name
chromosome 1 open reading frame 122provided by HGNC
Primary source
HGNC:HGNC:24789
See related
Ensembl:ENSG00000197982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALAESM
Expression
Ubiquitous expression in brain (RPKM 12.1), kidney (RPKM 11.0) and 25 other tissues See more
Orthologs
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Genomic context

See C1orf122 in Genome Data Viewer
Location:
1p34.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (37807790..37809454)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38273462..38275126)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene valosin containing protein lysine methyltransferase pseudogene Neighboring gene mannosidase endo-alpha like Neighboring gene yrdC N6-threonylcarbamoyltransferase domain containing Neighboring gene metal regulatory transcription factor 1 Neighboring gene ribosomal protein S2 pseudogene 13 Neighboring gene inositol polyphosphate-5-phosphatase B Neighboring gene RNA, U6 small nuclear 584, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23476, FLJ45459

General protein information

Preferred Names
uncharacterized protein C1orf122

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142726.2NP_001136198.1  uncharacterized protein C1orf122 isoform 2

    See identical proteins and their annotated locations for NP_001136198.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a distinct 5' UTR and lacks an in-frame portion of the 5' coding region, compared to variant 1. The resulting isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AL929472, AY517499, CV575592, CX788342
    Consensus CDS
    CCDS44112.1
    UniProtKB/Swiss-Prot
    Q6ZSJ8
    Related
    ENSP00000434520.1, ENST00000468084.1
    Conserved Domains (1) summary
    pfam15855
    Location:147
    DUF4726; Domain of unknown function (DUF4726)
  2. NM_198446.3NP_940848.2  uncharacterized protein C1orf122 isoform 1

    See identical proteins and their annotated locations for NP_940848.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL929472, AY517499, CX788342
    Consensus CDS
    CCDS427.2
    UniProtKB/Swiss-Prot
    Q6ZSJ8
    Related
    ENSP00000362133.4, ENST00000373042.5
    Conserved Domains (1) summary
    pfam15855
    Location:10110
    DUF4726; Domain of unknown function (DUF4726)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    37807790..37809454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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