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1110065P20Rik RIKEN cDNA 1110065P20 gene [ Mus musculus (house mouse) ]

Gene ID: 68920, updated on 31-Jan-2019

Summary

Official Symbol
1110065P20Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110065P20 geneprovided by MGI
Primary source
MGI:MGI:1916170
See related
Ensembl:ENSMUSG00000078570
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C530005M16Rik
Expression
Ubiquitous expression in testis adult (RPKM 60.4), ovary adult (RPKM 37.5) and 28 other tissues See more
Orthologs

Genomic context

See 1110065P20Rik in Genome Data Viewer
Location:
4; 4 D2.2
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (124849485..124850730, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (124526729..124527974, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene 12915 Neighboring gene predicted gene, 32117 Neighboring gene inositol polyphosphate-5-phosphatase B Neighboring gene microRNA 698 Neighboring gene metal response element binding transcription factor 1 Neighboring gene mannosidase, endo-alpha-like Neighboring gene yrdC domain containing (E.coli) Neighboring gene RIKEN cDNA 1700125G02 gene Neighboring gene Eph receptor A10

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C1orf122 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142727.1NP_001136199.1  uncharacterized protein C1orf122 homolog isoform 2

    See identical proteins and their annotated locations for NP_001136199.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AI390831, AK004382, AL606933, CF354565
    Consensus CDS
    CCDS51298.1
    UniProtKB/TrEMBL
    E9Q9M4
    Related
    ENSMUSP00000130892.1, ENSMUST00000163946.1
    Conserved Domains (1) summary
    pfam15855
    Location:147
    DUF4726; Domain of unknown function (DUF4726)
  2. NM_001347196.1NP_001334125.1  uncharacterized protein C1orf122 homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AL606933
    Consensus CDS
    CCDS84792.1
    UniProtKB/Swiss-Prot
    B1ARW8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    124849485..124850730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240609.2XP_011238911.1  uncharacterized protein C1orf122 homolog isoform X1

    Conserved Domains (1) summary
    pfam15855
    Location:10123
    DUF4726; Domain of unknown function (DUF4726)
  2. XM_006503375.3XP_006503438.1  uncharacterized protein C1orf122 homolog isoform X2

    Related
    ENSMUSP00000101796.2, ENSMUST00000106190.9
    Conserved Domains (1) summary
    pfam15855
    Location:10110
    DUF4726; Domain of unknown function (DUF4726)
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