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USP1 ubiquitin specific peptidase 1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123023623, updated on 22-Mar-2024

Summary

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Gene symbol
USP1
Gene description
ubiquitin specific peptidase 1
Locus tag
EYD10_09351
See related
Ensembl:ENSVKKG00000012133
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See USP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335587.1 (9257872..9271226)

NW_025335587.1Genomic Context describing neighboring genes Neighboring gene PATJ crumbs cell polarity complex component Neighboring gene KN motif and ankyrin repeat domains 4 Neighboring gene dedicator of cytokinesis 7 Neighboring gene autophagy related 4C cysteine peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335587 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 1
Names
Ubiquitin carboxyl-terminal hydrolase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335587.1 Reference ASM479886v1

    Range
    9257872..9271226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044430510.1 → XP_044286445.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X1

    Conserved Domains (1) summary
    cd02671
    Location:107 → 819
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_044430514.1 → XP_044286449.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X3

    Conserved Domains (1) summary
    cd02671
    Location:47 → 759
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_044430512.1 → XP_044286447.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2L6U7
    Related
    ENSVKKP00000017750.1, ENSVKKT00000018198.1
    Conserved Domains (1) summary
    cd02671
    Location:58 → 770
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_044430515.1 → XP_044286450.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X4

    Conserved Domains (1) summary
    cd02671
    Location:1 → 693
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  5. XM_044430513.1 → XP_044286448.1  ubiquitin carboxyl-terminal hydrolase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2L6U7
    Conserved Domains (1) summary
    cd02671
    Location:58 → 770
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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