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PNLIPRP3 pancreatic lipase related protein 3 [ Homo sapiens (human) ]

Gene ID: 119548, updated on 2-Nov-2024

Summary

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Official Symbol
PNLIPRP3provided by HGNC
Official Full Name
pancreatic lipase related protein 3provided by HGNC
Primary source
HGNC:HGNC:23492
See related
Ensembl:ENSG00000203837 AllianceGenome:HGNC:23492
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable triacylglycerol lipase activity. Predicted to be involved in lipid catabolic process. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in skin (RPKM 1.9) and esophagus (RPKM 0.8) See more
Orthologs
all
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Genomic context

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See PNLIPRP3 in Genome Data Viewer
Location:
10q25.3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (116427847..116477957)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (117322181..117372229)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (118187359..118237469)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 172 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2854 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 6 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:118211885-118212416 Neighboring gene high mobility group box 3 pseudogene 8 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:118240088-118240799 Neighboring gene NANOG hESC enhancer GRCh37_chr10:118301731-118302261 Neighboring gene RNA, U6 small nuclear 1090, pseudogene Neighboring gene pancreatic lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Novel PNLIPRP3 and DOCK8 gene expression and prognostic implications of DNA loss on chromosome 10q25.3 in hepatocellular carcinoma. Saelee P, et al. Asian Pac J Cancer Prev, 2009 Jul-Sep. PMID 19640199
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Over expression of pancreatic lipase-related protein 3 is associated with hepatocellular carcinoma.
    Title: Novel PNLIPRP3 and DOCK8 gene expression and prognostic implications of DNA loss on chromosome 10q25.3 in hepatocellular carcinoma.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pancreatic lipase-related protein 3
Names
PL-RP3
NP_001011709.2
XP_011537578.1
XP_011537579.1
XP_011537580.1
XP_011537581.1
XP_054220729.1
XP_054220730.1
XP_054220731.1
XP_054220732.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011709.3 → NP_001011709.2  pancreatic lipase-related protein 3 precursor

    See identical proteins and their annotated locations for NP_001011709.2

    Status: VALIDATED

    Source sequence(s)
    AC011328, BC117224
    Consensus CDS
    CCDS31292.1
    UniProtKB/Swiss-Prot
    Q17RR3
    Related
    ENSP00000358232.3, ENST00000369230.4
    Conserved Domains (3) summary
    cd00707
    Location:52 → 348
    Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
    cd01759
    Location:355 → 467
    PLAT_PL; PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of ...
    pfam00151
    Location:18 → 352
    Lipase; Lipase

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    116427847..116477957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539276.2 → XP_011537578.1  pancreatic lipase-related protein 3 isoform X1

    Conserved Domains (2) summary
    cd00707
    Location:52 → 257
    Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
    cl00011
    Location:271 → 383
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

  2. XM_011539279.2 → XP_011537581.1  pancreatic lipase-related protein 3 isoform X3

    See identical proteins and their annotated locations for XP_011537581.1

    Conserved Domains (2) summary
    cd00707
    Location:1 → 243
    Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
    cd01759
    Location:250 → 362
    PLAT_PL; PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of ...

  3. XM_011539278.1 → XP_011537580.1  pancreatic lipase-related protein 3 isoform X3

    See identical proteins and their annotated locations for XP_011537580.1

    Conserved Domains (2) summary
    cd00707
    Location:1 → 243
    Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
    cd01759
    Location:250 → 362
    PLAT_PL; PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of ...

  4. XM_011539277.1 → XP_011537579.1  pancreatic lipase-related protein 3 isoform X2

    Conserved Domains (2) summary
    cd00707
    Location:3 → 249
    Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
    cd01759
    Location:256 → 368
    PLAT_PL; PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of ...

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    117322181..117372229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054364754.1 → XP_054220729.1  pancreatic lipase-related protein 3 isoform X1

  2. XM_054364757.1 → XP_054220732.1  pancreatic lipase-related protein 3 isoform X3

  3. XM_054364756.1 → XP_054220731.1  pancreatic lipase-related protein 3 isoform X3

  4. XM_054364755.1 → XP_054220730.1  pancreatic lipase-related protein 3 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q17RR3.2 GenPept UniProtKB/Swiss-Prot:Q17RR3

Gene LinkOut

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