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LCOR ligand dependent nuclear receptor corepressor [ Pipistrellus kuhlii (Kuhl's pipistrelle) ]

Gene ID: 118719344, updated on 30-Mar-2024

Summary

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Gene symbol
LCOR
Gene description
ligand dependent nuclear receptor corepressor
Locus tag
mPipKuh1_007486
Gene type
protein coding
RefSeq status
MODEL
Organism
Pipistrellus kuhlii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Pipistrellus
Orthologs
human mouse all
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Genomic context

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See LCOR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current mPipKuh1.p (GCF_014108245.1) Unplaced Scaffold NW_023425460.1 (29193486..29289823)

NW_023425460.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4-like Neighboring gene U2 spliceosomal RNA Neighboring gene slit guidance ligand 1 Neighboring gene Rho GTPase activating protein 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023425460 Unplaced Scaffold Reference mPipKuh1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ligand-dependent corepressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pipistrellus kuhlii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPipKuh1.p

Genomic

  1. NW_023425460.1 Reference mPipKuh1.p

    Range
    29193486..29289823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045581956.1 → XP_045437912.1  ligand-dependent corepressor isoform X1

    UniProtKB/TrEMBL
    A0A7J7VBM3
    Conserved Domains (4) summary
    PHA03247
    Location:526 → 742
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:821 → 1100
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam15090
    Location:1084 → 1548
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:643 → 928
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  2. XM_036438719.2 → XP_036294612.1  ligand-dependent corepressor isoform X2

    Conserved Domains (4) summary
    COG5271
    Location:977 → 1256
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05109
    Location:645 → 917
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam15090
    Location:1240 → 1704
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:799 → 1084
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  3. XM_036438724.2 → XP_036294617.1  ligand-dependent corepressor isoform X1

    UniProtKB/TrEMBL
    A0A7J7VBM3
    Conserved Domains (4) summary
    PHA03247
    Location:526 → 742
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:821 → 1100
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam15090
    Location:1084 → 1548
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:643 → 928
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  4. XM_045581954.1 → XP_045437910.1  ligand-dependent corepressor isoform X1

    UniProtKB/TrEMBL
    A0A7J7VBM3
    Conserved Domains (4) summary
    PHA03247
    Location:526 → 742
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:821 → 1100
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam15090
    Location:1084 → 1548
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:643 → 928
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  5. XM_045581955.1 → XP_045437911.1  ligand-dependent corepressor isoform X1

    UniProtKB/TrEMBL
    A0A7J7VBM3
    Conserved Domains (4) summary
    PHA03247
    Location:526 → 742
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:821 → 1100
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam15090
    Location:1084 → 1548
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:643 → 928
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  6. XM_045581957.1 → XP_045437913.1  ligand-dependent corepressor isoform X4

    UniProtKB/TrEMBL
    A0A7J7VBD6
    Conserved Domains (1) summary
    pfam05225
    Location:352 → 395
    HTH_psq; helix-turn-helix, Psq domain

  7. XM_036438721.2 → XP_036294614.1  ligand-dependent corepressor isoform X3

    Conserved Domains (4) summary
    COG5271
    Location:960 → 1239
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05109
    Location:628 → 900
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam15090
    Location:1223 → 1687
    DUF4553; Domain of unknown function (DUF4553)
    NF033845
    Location:782 → 1067
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
Nucleotide Protein
Heading Accession and Version

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