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atg101 autophagy related 101 [ Scophthalmus maximus (turbot) ]

Gene ID: 118300108, updated on 3-Apr-2024

Summary

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Gene symbol
atg101
Gene description
autophagy related 101
See related
EnsemblRapid:ENSSMAG00025019946
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See atg101 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 2 NC_061516.1 (9611943..9613557, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 4 NC_049691.1 (18369889..18371497)

Chromosome 2 - NC_061516.1Genomic Context describing neighboring genes Neighboring gene uromodulin-like 1 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene C2 domain-containing protein 2 Neighboring gene PR domain containing 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 101

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061516.1 Reference ASM2237912v1 Primary Assembly

    Range
    9611943..9613557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035624191.2 → XP_035480084.2  autophagy-related protein 101

    UniProtKB/TrEMBL
    A0A2U9B9L4
    Related
    ENSSMAP00025062583.1, ENSSMAT00025067086.1
Nucleotide Protein Strain
Heading Accession and Version

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