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tnpB IS66 family insertion sequence element accessory protein TnpB [ Pseudomonas syringae pv. tomato str. DC3000 ]

Gene ID: 1181805, updated on 8-Aug-2023

Summary

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Gene symbol
tnpB
Gene description
IS66 family insertion sequence element accessory protein TnpB
Locus tag
PSPTO_RS01035
Gene type
protein coding
Organism
Pseudomonas syringae pv. tomato str. DC3000 (strain: DC3000, pathovar: tomato, type-material: reference strain of Pseudomonas syringae group genomosp. 3)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Old locus tag
PSPTO0197; PSPTO_0197
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Genomic context

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Sequence:
NC_004578.1 (221125..221484, complement)

NC_004578.1Genomic Context describing neighboring genes Neighboring gene IS21-like element ISPsy4 family helper ATPase IstB Neighboring gene IS21-like element ISPsy4 family transposase Neighboring gene IS66-like element ISPsy5 family transposase Neighboring gene pseudo Neighboring gene IS66 family insertion sequence element accessory protein TnpB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004578.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
IS66 family insertion sequence element accessory protein TnpB
WP_003409203.1
  • TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004578.1 Reference assembly

    Range
    221125..221484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003409203.1 MULTISPECIES: IS66 family insertion sequence element accessory protein TnpB [Pseudomonadota]

    See identical proteins and their annotated locations for WP_003409203.1

    UniProtKB/TrEMBL
    A0A0N8QD26, A0A0Q0A975, A0A3M2WTX2, Q877K1
    Conserved Domains (1) summary
    pfam05717
    Location:14 → 109
    TnpB_IS66; IS66 Orf2 like protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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