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LOC117206984 LIM/homeobox protein LMX-1.2-like [ Bombus bifarius ]

Gene ID: 117206984, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117206984
Gene description
LIM/homeobox protein LMX-1.2-like
See related
EnsemblRapid:ENSBBSG00000017154
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus bifarius
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
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Genomic context

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See LOC117206984 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Bbif_JDL3187 (GCF_011952205.1) Unplaced Scaffold NW_022884390.1 (1432787..1445379, complement)

NW_022884390.1Genomic Context describing neighboring genes Neighboring gene lysophospholipase D GDPD1-like Neighboring gene proton-coupled amino acid transporter-like protein CG1139 Neighboring gene uncharacterized LOC117207008 Neighboring gene uncharacterized LOC117207006 Neighboring gene proton-coupled amino acid transporter-like protein CG1139 Neighboring gene protein tramtrack Neighboring gene beta-1,3-galactosyltransferase 5 Neighboring gene uncharacterized LOC117206926

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022884390 Unplaced Scaffold Reference Bbif_JDL3187

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM homeobox transcription factor 1-beta-like; LIM/homeobox protein LMX-1.2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus bifarius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bbif_JDL3187

Genomic

  1. NW_022884390.1 Reference Bbif_JDL3187

    Range
    1432787..1445379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033446746.1 → XP_033302637.1  LIM/homeobox protein LMX-1.2-like isoform X2

    UniProtKB/TrEMBL
    A0A6P8MKW6
    Conserved Domains (4) summary
    cd09371
    Location:58 → 110
    LIM1_Lmx1b; The first LIM domain of Lmx1b
    smart00132
    Location:116 → 170
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    COG5576
    Location:162 → 280
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:201 → 255
    Homeobox; Homeobox domain

  2. XM_033446745.1 → XP_033302636.1  LIM homeobox transcription factor 1-beta-like isoform X1

    UniProtKB/TrEMBL
    A0A6P8LPP1
    Related
    ENSBBSP00000025194.1, ENSBBST00000039150.1
    Conserved Domains (4) summary
    cd09371
    Location:58 → 110
    LIM1_Lmx1b; The first LIM domain of Lmx1b
    smart00132
    Location:116 → 170
    LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
    COG5576
    Location:162 → 280
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:201 → 255
    Homeobox; Homeobox domain
Nucleotide Protein
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