1NYP,1G47,2CUP,2EGQ,1X4L,2DFY,2DAR,2D8Y,1B8T,2O13,2JTN,1IML,2EHE,2XJY,1WYH,2XQN


Conserved Protein Domain Family
LIM

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smart00132: LIM 
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Zinc-binding domain present in Lin-11, Isl-1, Mec-3.
Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Statistics
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PSSM-Id: 214528
Aligned: 111 rows
Threshold Bit Score: 38.5189
Threshold Setting Gi: 193207027
Created: 18-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NYP_A          7 ICGACRRPIEG-------RVVNAMGKQWHVEHFVCAKCEKPFLG----HRHYERKGLAYCETH 58   human
CAP20896     1014 VCFMCTRPILG-------VMARAAGKNLHGDCLSCATCGNSLRN----VGHHFIEDKFYCDIH 1065 Caenorhabditis briggsae AF16
XP_001105778 1240 RCSVCGGAIMPepgqeetVRIVALDRSFHIGCYKCEECGLLLSSegecQGCYPLDGHILCKAC 1302 rhesus monkey
AAC35506      130 tCAACDQALHSg------QVLLALGLSWHVYCFKCSECSAVL-H----GEYMSHHGKPLCLRD 181  nematode
NP_496777     103 RCALCSKPIVPqdgekesVRVVAMDKSFHVDCYKCEDCGMQLSSklegqgcypidnhllcktc 165  nematode
CAY81167      620 ICKVCSNFIEGe------CLENDKVERFHVDCLNCFLCKTAITN----DYYIFNGEIPLCGNH 672  Saccharomyces cerevisiae EC1118
NP_001129852   45 RCAGCKKGVSPtd----mVYKLKAGLVFHVECHCCSLCGRHLSPge-qILVDDTMMTVSCMSH 102  nematode
NP_509970     170 CCRKCEIPLNRe-----dMVMKAKEMIFHHACFVCFICGIKLNPg--dYYTMSPQGHLYCHAH 225  nematode
I39059         65 RCSVCKEPICQpra-rrrLSYCGFGSRFHVHCYRCEDCGGLLSEgd-nQGCYPLDGHILCKTC 125  human
EDN59992      555 PCRACGLEVTGkrm--fsKKENELSGQWHRECFKCIECGIKFNKh---VPCYILGDEPYCQKH 612  Saccharomyces cerevisiae YJM789
CAP20896     1014 VCFMCTRPILG-------VMARAAGKNLHGDCLSCATCGNSLRN----VGHHFIEDKFYCDIH 1065 Caenorhabditis briggsae AF16
XP_001105778 1240 RCSVCGGAIMPepgqeetVRIVALDRSFHIGCYKCEECGLLLSSegecQGCYPLDGHILCKAC 1302 rhesus monkey
AAC35506      130 tCAACDQALHSg------QVLLALGLSWHVYCFKCSECSAVL-H----GEYMSHHGKPLCLRD 181  nematode
NP_496777     103 RCALCSKPIVPqdgekesVRVVAMDKSFHVDCYKCEDCGMQLSSklegqgcypidnhllcktc 165  nematode
CAY81167      620 ICKVCSNFIEGe------CLENDKVERFHVDCLNCFLCKTAITN----DYYIFNGEIPLCGNH 672  Saccharomyces cerevisiae EC1118
NP_001129852   45 RCAGCKKGVSPtd----mVYKLKAGLVFHVECHCCSLCGRHLSPge-qILVDDTMMTVSCMSH 102  nematode
NP_509970     170 CCRKCEIPLNRe-----dMVMKAKEMIFHHACFVCFICGIKLNPg--dYYTMSPQGHLYCHAH 225  nematode
I39059         65 RCSVCKEPICQpra-rrrLSYCGFGSRFHVHCYRCEDCGGLLSEgd-nQGCYPLDGHILCKTC 125  human
EDN59992      555 PCRACGLEVTGkrm--fsKKENELSGQWHRECFKCIECGIKFNKh---VPCYILGDEPYCQKH 612  Saccharomyces cerevisiae YJM789
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