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LOC116683564 sorbin and SH3 domain-containing protein 1-like [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116683564, updated on 18-Mar-2024

Summary

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Gene symbol
LOC116683564
Gene description
sorbin and SH3 domain-containing protein 1-like
Locus tag
FQN60_003413
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) Unplaced Scaffold NW_022604642.1 (15570..63816)

NW_022604642.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116683567 Neighboring gene PDZ and LIM domain 1 (elfin) Neighboring gene neurogenin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022604642 Unplaced Scaffold Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-substrate adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-substrate junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorbin and SH3 domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NW_022604642.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    15570..63816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032509902.1 → XP_032365793.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  2. XM_032509899.1 → XP_032365790.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  3. XM_032509913.1 → XP_032365804.1  sorbin and SH3 domain-containing protein 1-like isoform X9

    Conserved Domains (4) summary
    cd11780
    Location:1377 → 1430
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  4. XM_032509915.1 → XP_032365806.1  sorbin and SH3 domain-containing protein 1-like isoform X10

    Conserved Domains (4) summary
    cd11780
    Location:1248 → 1301
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  5. XM_032509916.1 → XP_032365807.1  sorbin and SH3 domain-containing protein 1-like isoform X11

    Conserved Domains (4) summary
    cd11780
    Location:1203 → 1256
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  6. XM_032509911.1 → XP_032365802.1  sorbin and SH3 domain-containing protein 1-like isoform X7

    Conserved Domains (4) summary
    cd11780
    Location:1394 → 1447
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1039 → 1094
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:966 → 1019
    SH3; Src Homology 3 domain superfamily

  7. XM_032509909.1 → XP_032365800.1  sorbin and SH3 domain-containing protein 1-like isoform X5

    Conserved Domains (4) summary
    cd11780
    Location:1397 → 1450
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1042 → 1097
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 216
    Sorb; Sorbin homologous domain
    cl17036
    Location:969 → 1022
    SH3; Src Homology 3 domain superfamily

  8. XM_032509906.1 → XP_032365797.1  sorbin and SH3 domain-containing protein 1-like isoform X2

    Conserved Domains (4) summary
    cd11780
    Location:1420 → 1473
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1065 → 1120
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:190 → 214
    Sorb; Sorbin homologous domain
    cl17036
    Location:992 → 1045
    SH3; Src Homology 3 domain superfamily

  9. XM_032509910.1 → XP_032365801.1  sorbin and SH3 domain-containing protein 1-like isoform X6

    Conserved Domains (4) summary
    cd11780
    Location:1395 → 1448
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1040 → 1095
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 214
    Sorb; Sorbin homologous domain
    cl17036
    Location:967 → 1020
    SH3; Src Homology 3 domain superfamily

  10. XM_032509907.1 → XP_032365798.1  sorbin and SH3 domain-containing protein 1-like isoform X3

    Conserved Domains (4) summary
    cd11780
    Location:1412 → 1465
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1057 → 1112
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:176 → 199
    Sorb; Sorbin homologous domain
    cl17036
    Location:984 → 1037
    SH3; Src Homology 3 domain superfamily

  11. XM_032509912.1 → XP_032365803.1  sorbin and SH3 domain-containing protein 1-like isoform X8

    Conserved Domains (4) summary
    cd11780
    Location:1387 → 1440
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1032 → 1087
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:176 → 206
    Sorb; Sorbin homologous domain
    cl17036
    Location:959 → 1012
    SH3; Src Homology 3 domain superfamily

  12. XM_032509908.1 → XP_032365799.1  sorbin and SH3 domain-containing protein 1-like isoform X4

    Conserved Domains (4) summary
    cd11780
    Location:1410 → 1463
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1055 → 1110
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:180 → 204
    Sorb; Sorbin homologous domain
    cl17036
    Location:982 → 1035
    SH3; Src Homology 3 domain superfamily

  13. XM_032509904.1 → XP_032365795.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  14. XM_032509900.1 → XP_032365791.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  15. XM_032509905.1 → XP_032365796.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily

  16. XM_032509901.1 → XP_032365792.1  sorbin and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    cd11780
    Location:1422 → 1475
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cd11922
    Location:1067 → 1122
    SH3_Sorbs1_2; Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin
    cl02617
    Location:186 → 209
    Sorb; Sorbin homologous domain
    cl17036
    Location:994 → 1047
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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