U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RP1 RP1 axonemal microtubule associated [ Sapajus apella (tufted capuchin) ]

Gene ID: 116563471, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
RP1
Gene description
RP1 axonemal microtubule associated
See related
EnsemblRapid:ENSSAEG00000007157
Gene type
protein coding
RefSeq status
MODEL
Organism
Sapajus apella
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current GSC_monkey_1.0 (GCF_009761245.1) Unplaced Scaffold NW_022436975.1 (6707758..7018571)

NW_022436975.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116563470 Neighboring gene signal peptidase complex catalytic subunit SEC11A pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene interferon-induced transmembrane protein 3 pseudogene Neighboring gene XK related 4 Neighboring gene uncharacterized LOC116563474 Neighboring gene uncharacterized LOC116563475

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022436975 Unplaced Scaffold Reference GSC_monkey_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photoreceptor cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retina development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
oxygen-regulated protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sapajus apella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_monkey_1.0

Genomic

  1. NW_022436975.1 Reference GSC_monkey_1.0

    Range
    6707758..7018571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032296101.1 → XP_032151992.1  oxygen-regulated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3JAW2
    Conserved Domains (5) summary
    cd01756
    Location:392 → 510
    PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
    cd17145
    Location:36 → 114
    DCX1_RP1; Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein
    cd17147
    Location:154 → 229
    DCX2_RP1; Dublecortin-like domain 2 found in retinitis pigmentosa 1 (RP1)-like protein
    cl00011
    Location:265 → 381
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl00060
    Location:544 → 578
    FGF; Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate ...

  2. XM_032296099.1 → XP_032151990.1  oxygen-regulated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J3JC36
    Conserved Domains (2) summary
    cd17145
    Location:36 → 114
    DCX1_RP1; Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein
    cd17147
    Location:154 → 229
    DCX2_RP1; Dublecortin-like domain 2 found in retinitis pigmentosa 1 (RP1)-like protein

  3. XM_032296098.1 → XP_032151989.1  oxygen-regulated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J3JC36
    Related
    ENSSAEP00000007424.1, ENSSAET00000010102.1
    Conserved Domains (2) summary
    cd17145
    Location:36 → 114
    DCX1_RP1; Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein
    cd17147
    Location:154 → 229
    DCX2_RP1; Dublecortin-like domain 2 found in retinitis pigmentosa 1 (RP1)-like protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.