Conserved Protein Domain Family
DCX1_RP1

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cd17145: DCX1_RP1 
Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein
RP1, also termed oxygen-regulated protein 1, is a member of the doublecortin (DCX) family. Its DCX domains occur in double tandem repeats. RP1 is associated with retinitis pigmentosa, which is a type of inherited blindness. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The RP1 protein is expressed in photoreceptors and is required for correct stacking of outer segment discs. It interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.
Statistics
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PSSM-Id: 340665
Aligned: 6 rows
Threshold Bit Score: 161.907
Created: 25-Jun-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
key conserved
Feature 1: key conserved lysine K33, 1 residue position
Conserved feature residue pattern:[KR]Click to see conserved feature residue pattern help
Evidence:
  • Comment:K33/R (Ub numbering) is one of 7 lysines involved in chain linkage in ubiquitin (K6, K11, K27, K29, K33, K48, or K63, Ub numbering), the other 6 lysines are not conserved in this subfamily; may have other functions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #                                         
P56715         36 KRISFYKSGDPQFGGVRVVVNPRSFKSFDALLDNLSRKVPLPFGVRNISTPRGRHSITRLeELEDGESYLCSHGRKVQP 114  human
ETE73260       90 KRICFYKSGDPQFNGIKMVVNSRSFRSFDALLDNLSKKVPLPFGVRNITTPRGVHNINNLeDLEDGKSYICSQQKKIKP 168  king cobra
AAH78105       37 KRVCFYKSGDPQFNGIKMVVSNRSFKTFDALLDTLSKKVPLPFGVRNISTPRGIHHVTSInELEDGKSYICSHRKKIKP 115  African clawed...
CAG12276       37 KRVCFYKSGDYKFSGHRIVINGRTFKTYDALLDALSKKVPLPFGVRTITTPRGTHLVRTLdDLHDGGSYVCSDQKRVKP 115  Tetraodon nigr...
XP_007889226   34 RRVDFYKSGDPQFGNLRVAINSRTFKTFDSLLDNLSKKIPLPFGVRTITTPLGVHHITSLeDFQDGNAYICSDQKKVKP 112  elephant shark
XP_014342376   35 KKVCFYKSGDPQFSGLKMVVSNRSFKTFDALLDNLSKKVPLPFGVRNITTPKGVHNITRLeELEDGKSYICSHQKKVKP 113  coelacanth

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