U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ecym_4242 hypothetical protein [ Eremothecium cymbalariae DBVPG#7215 ]

Gene ID: 11472475, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
Ecym_4242
Gene description
hypothetical protein
Locus tag
Ecym_4242
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_016452.1 (504084..505334)

Chromosome 4 - NC_016452.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_016452.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
hypothetical protein
XP_003646124.1
  • similar to Ashbya gossypii AGL183C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016452.1 Reference assembly

    Range
    504084..505334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003646076.1 → XP_003646124.1  hypothetical protein Ecym_4242 [Eremothecium cymbalariae DBVPG#7215]

    See identical proteins and their annotated locations for XP_003646124.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8JTF4
    Conserved Domains (4) summary
    COG5176
    Location:14 → 250
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
    cd02395
    Location:130 → 248
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam00098
    Location:279 → 293
    zf-CCHC; Zinc knuckle
    pfam16275
    Location:14 → 124
    SF1-HH; Splicing factor 1 helix-hairpin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases