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LOC11417139 probable histone H2B.1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11417139, updated on 6-Jun-2024

Summary

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Gene symbol
LOC11417139
Gene description
probable histone H2B.1
Locus tag
MtrunA17_Chr4g0035061
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (34567029..34567765)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (26433781..26434508)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-40S ribosomal protein S27a Neighboring gene uncharacterized LOC112420872 Neighboring gene probable histone H2B.2 Neighboring gene 3-ketoacyl-CoA synthase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable histone H2B.1
Names
core histone H2A/H2B/H3/H4
putative transcription factor Hap3/NF-YB family

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001425027.1 → NP_001411956.1  probable histone H2B.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ846529, GHBM01041241, GT137197
    UniProtKB/Swiss-Prot
    Q1S9I9
    UniProtKB/TrEMBL
    A0A072UK77, G7JHB1, G7JIM4

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    34567029..34567765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003606876.4 → XP_003606924.2  probable histone H2B.1

    Conserved Domains (1) summary
    smart00427
    Location:58 → 147
    H2B; Histone H2B
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases