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FARP1 FERM, ARH/RhoGEF and pleckstrin domain protein 1 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112962228, updated on 15-Mar-2024

Summary

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Gene symbol
FARP1
Gene description
FERM, ARH/RhoGEF and pleckstrin domain protein 1
See related
Ensembl:ENSARWG00000009105
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See FARP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447686.1 (912432..1091211, complement)

NW_020447686.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 15 member 1 Neighboring gene serine/threonine kinase 24 Neighboring gene importin 5 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447686 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FERM, ARHGEF and pleckstrin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447686.1 Reference aptRow1

    Range
    912432..1091211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026058206.1 → XP_025913991.1  FERM, ARHGEF and pleckstrin domain-containing protein 1

    Related
    ENSARWP00000013138.1, ENSARWT00000014998.1
    Conserved Domains (6) summary
    smart00295
    Location:42 → 230
    B41; Band 4.1 homologues
    cd00160
    Location:539 → 726
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd01220
    Location:751 → 859
    PH1_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1
    cd13193
    Location:217 → 337
    FERM_C_FARP1-like; FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
    cd13235
    Location:928 → 1025
    PH2_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2
    pfam08736
    Location:329 → 370
    FA; FERM adjacent (FA)
Nucleotide Protein
Heading Accession and Version

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