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LOC112282916 sphingosine kinase 1-like [ Physcomitrium patens ]

Gene ID: 112282916, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112282916
Gene description
sphingosine kinase 1-like
Locus tag
PHYPA_001248
Gene type
protein coding
RefSeq status
MODEL
Organism
Physcomitrium patens
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Phypa V3 (GCF_000002425.4) 1 NC_037253.1 (19680655..19685166, complement)

Chromosome 1 - NC_037253.1Genomic Context describing neighboring genes Neighboring gene histidine kinase 5-like Neighboring gene myosin-9-like Neighboring gene uncharacterized LOC112283011 Neighboring gene kinesin-like protein KIN-13B Neighboring gene uncharacterized LOC112280295

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037253.1 Chromosome 1 Reference Phypa V3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Phypa V3 Primary Assembly

Genomic

  1. NC_037253.1 Reference Phypa V3 Primary Assembly

    Range
    19680655..19685166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024521129.1 → XP_024376897.1  sphingosine kinase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A7I4FBM7
    Conserved Domains (1) summary
    cl27661
    Location:4 → 482
    LCB5; Diacylglycerol kinase family enzyme [Lipid transport and metabolism, General function prediction only]

  2. XM_024521221.1 → XP_024376989.1  sphingosine kinase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A2K1L9X0, A0A7I4FBM7
    Conserved Domains (1) summary
    cl27661
    Location:4 → 481
    LCB5; Diacylglycerol kinase family enzyme [Lipid transport and metabolism, General function prediction only]
Nucleotide Protein
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