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Taxonomy browser (Physcomitrella patens)

Physcomitrella patens

Taxonomy ID: 3218 (for references in articles please use NCBI:txid3218)
Scientific name: Physcomitrella patens (Hedw.) Bruch & Schimp.
homotypic synonym: Physcomitrella patens subsp. patens
homotypic synonym: Physcomitrium patens (Hedw.) Mitt.
Inherited blast name: mosses
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
   Entrez records   
Database name Direct links
Nucleotide 212,150
Nucleotide EST 231,747
Nucleotide GSS 176,675
Protein 81,702
Structure 19
Genome 1
Popset 53
Conserved Domains 3
GEO Datasets 224
UniGene 17,573
PubMed Central 3,993
Gene 59,682
SRA Experiments 794
Protein Clusters 9,051
Identical Protein Groups 45,975
Bio Project 275
Bio Sample 1,004
Bio Systems 252
Assembly 3
Probe 166
Taxonomy 1

Comments and References:

Nota BeneFNA - Physcomitrella
Goffinet B. 2007. Physcomitrella Bruch & Schimper, Bryol. Europ. 1: 13. 1849. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 27: Bryophytes: Mosses, Part 1. New York and Oxford. On-line version.

Nota BeneFNA - Funariaceae
McIntosh TT. 2007. Funariaceae Schaewgrichen. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 27: Bryophytes: Mosses, Part 1. New York and Oxford. On-line version.

Nota BeneTROPICOS (Feb 05, 2010)
Name verified on 5 February 2010 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Reference to PubMed documentBeike AK et al. 2014
http://www.biomedcentral.com/1471-2148/14/158
Beike AK, Von Stackelberg M, Hanke ST, Follo M, Quandt D, McDaniel S, Reski R, Tan BC, Frahm J-P and Rensing SA. 2014. Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC Evolutionary Biology 14 (1), 158.


Genome Information

Go to NCBI genomic BLAST page for Physcomitrella patens
Genome view: 27 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
176,675 7,354,142 7,530,817
WUGSC - Washington University, Genome Sequencing Center
18,856 - 18,856
Totals per type
195,531 7,354,142 7,549,673

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Physcomitrella patens taxonomy taxonomy/phylogenetic Arctos Specimen Database
Physcomitrella patens Bruch & W. P. Schimper in B. S. G., 1849 taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
Physcomitrella patens (Hedw.) Bruch & Schimp. in B.S.G. taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Physcomitrella patens taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Physcomitrella patens taxonomy/phylogenetic TreeBase
WebScipio: Physcomitrella patens organism-specific WebScipio - eukaryotic gene identification
diArk: Physcomitrella patens organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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