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LOC111158109 DEAD-box helicase 5 [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111158109, updated on 15-Mar-2024

Summary

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Gene symbol
LOC111158109
Gene description
DEAD-box helicase 5
See related
EnsemblRapid:ENSELKG00000010129
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154141.1 (7984262..7991550)

NW_019154141.1Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 2 Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 Neighboring gene centrosomal protein 95 Neighboring gene DNA polymerase gamma 2, accessory subunit Neighboring gene mast cell immunoglobulin like receptor 1 Neighboring gene protein JTB pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154141 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154141.1 Reference ASM228890v2 Primary Assembly

    Range
    7984262..7991550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022519960.1 → XP_022375668.1  probable ATP-dependent RNA helicase DDX5

    UniProtKB/TrEMBL
    A0A2Y9KNW6
    Related
    ENSELKP00000013460.1, ENSELKT00000014987.1
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:498 → 532
    P68HR; P68HR (NUC004) repeat

  2. XM_022519959.1 → XP_022375667.1  probable ATP-dependent RNA helicase DDX5

    UniProtKB/TrEMBL
    A0A2Y9KNW6
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:498 → 532
    P68HR; P68HR (NUC004) repeat
Nucleotide Protein
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