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LOC110987410 zinc finger protein 40-like [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110987410, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110987410
Gene description
zinc finger protein 40-like
See related
EnsemblRapid:LOC110987410
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
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Genomic context

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See LOC110987410 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091544.1 (370996..404557)

NW_019091544.1Genomic Context describing neighboring genes Neighboring gene Niemann-Pick C1 protein-like Neighboring gene androgen-induced gene 1 protein-like Neighboring gene uncharacterized LOC110987409 Neighboring gene uncharacterized LOC110987407

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091544 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 40-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091544.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    370996..404557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022250122.1 → XP_022105814.1  zinc finger protein 40-like

    UniProtKB/TrEMBL
    A0A8B7ZJW5
    Related
    XP_022105814.1, XM_022250122.1
    Conserved Domains (6) summary
    smart00451
    Location:1956 → 1989
    ZnF_U1; U1-like zinc finger
    sd00017
    Location:2676 → 2696
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1931 → 1953
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:416 → 440
    zf-H2C2_2; Zinc-finger double domain
    cl28087
    Location:2303 → 2499
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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