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Nfasc neurofascin [ Mus pahari (shrew mouse) ]

Gene ID: 110322514, updated on 15-Mar-2024

Summary

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Gene symbol
Nfasc
Gene description
neurofascin
See related
Ensembl:MGP_PahariEiJ_G0027827
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
35
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 5 NC_034594.1 (106813895..106987805, complement)

Chromosome 5 - NC_034594.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 81 Neighboring gene contactin 2 Neighboring gene U2 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034594.1 Chromosome 5 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurofascin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034594.1 Reference PAHARI_EIJ_v1.1

    Range
    106813895..106987805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029538295.1 → XP_029394155.1  neurofascin isoform X12

    Conserved Domains (6) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:709 → 799
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:545 → 611
    Ig; Immunoglobulin domain
    cd05731
    Location:360 → 430
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1151 → 1231
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain

  2. XM_029538287.1 → XP_029394147.1  neurofascin isoform X2

    Related
    MGP_PahariEiJ_P0075132, MGP_PahariEiJ_T0075132.1
    Conserved Domains (6) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:724 → 814
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:545 → 611
    Ig; Immunoglobulin domain
    cd05731
    Location:360 → 430
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1334 → 1414
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain

  3. XM_029538300.1 → XP_029394160.1  neurofascin isoform X16

    Conserved Domains (6) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:726 → 816
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:562 → 628
    Ig; Immunoglobulin domain
    cd05731
    Location:377 → 447
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1056 → 1136
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain

  4. XM_029538288.1 → XP_029394148.1  neurofascin isoform X3

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:715 → 805
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1325 → 1405
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  5. XM_029538299.1 → XP_029394159.1  neurofascin isoform X15

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1060 → 1140
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  6. XM_021199194.2 → XP_021054853.1  neurofascin isoform X6

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1233 → 1313
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  7. XM_029538293.1 → XP_029394153.1  neurofascin isoform X9

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1167 → 1247
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  8. XM_029538292.1 → XP_029394152.1  neurofascin isoform X7

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1172 → 1252
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  9. XM_029538289.1 → XP_029394149.1  neurofascin isoform X4

    Conserved Domains (6) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1250 → 1330
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  10. XM_021199193.2 → XP_021054852.1  neurofascin isoform X1

    Conserved Domains (8) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1222 → 1294
    fn3; Fibronectin type III domain
    pfam13882
    Location:1340 → 1424
    Bravo_FIGEY; Bravo-like intracellular region
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain
    cl28434
    Location:630 → 711
    I-set; Immunoglobulin I-set domain

  11. XM_021199196.2 → XP_021054855.1  neurofascin isoform X10

    Conserved Domains (6) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:726 → 816
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:562 → 628
    Ig; Immunoglobulin domain
    cd05731
    Location:377 → 447
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1163 → 1243
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain

  12. XM_021199195.2 → XP_021054854.1  neurofascin isoform X8

    Related
    MGP_PahariEiJ_P0075131, MGP_PahariEiJ_T0075131.1
    Conserved Domains (6) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:726 → 816
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:562 → 628
    Ig; Immunoglobulin domain
    cd05731
    Location:377 → 447
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1168 → 1248
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain

  13. XM_029538291.1 → XP_029394151.1  neurofascin isoform X5

    Conserved Domains (6) summary
    cd05875
    Location:53 → 129
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:639 → 729
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:460 → 526
    Ig; Immunoglobulin domain
    cd05731
    Location:275 → 345
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1249 → 1329
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 226
    Ig; Immunoglobulin domain

  14. XM_029538298.1 → XP_029394158.1  neurofascin isoform X14

    Related
    MGP_PahariEiJ_P0075133, MGP_PahariEiJ_T0075133.1
    Conserved Domains (6) summary
    cd05875
    Location:53 → 129
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:639 → 729
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:460 → 526
    Ig; Immunoglobulin domain
    cd05731
    Location:275 → 345
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1081 → 1161
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 226
    Ig; Immunoglobulin domain

  15. XM_029538290.1 → XP_029394150.1  neurofascin isoform X5

    Conserved Domains (6) summary
    cd05875
    Location:53 → 129
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:639 → 729
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:460 → 526
    Ig; Immunoglobulin domain
    cd05731
    Location:275 → 345
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1249 → 1329
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 226
    Ig; Immunoglobulin domain

  16. XM_029538297.1 → XP_029394157.1  neurofascin isoform X13

    Conserved Domains (6) summary
    cd05875
    Location:59 → 135
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:645 → 735
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:466 → 532
    Ig; Immunoglobulin domain
    cd05731
    Location:281 → 351
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1255 → 1335
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:140 → 232
    Ig; Immunoglobulin domain

  17. XM_021199197.2 → XP_021054856.1  neurofascin isoform X17

    Conserved Domains (6) summary
    cd05875
    Location:53 → 129
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:607 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:443 → 509
    Ig; Immunoglobulin domain
    cd05731
    Location:258 → 328
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1049 → 1129
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 226
    Ig; Immunoglobulin domain

  18. XM_029538296.1 → XP_029394156.1  neurofascin isoform X13

    Conserved Domains (6) summary
    cd05875
    Location:59 → 135
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:645 → 735
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:466 → 532
    Ig; Immunoglobulin domain
    cd05731
    Location:281 → 351
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    pfam13882
    Location:1255 → 1335
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:140 → 232
    Ig; Immunoglobulin domain

  19. XM_029538294.1 → XP_029394154.1  neurofascin isoform X11

    Conserved Domains (5) summary
    cd05875
    Location:161 → 237
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:730 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:551 → 617
    Ig; Immunoglobulin domain
    cd05731
    Location:366 → 436
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cl11960
    Location:242 → 334
    Ig; Immunoglobulin domain

  20. XM_029538301.1 → XP_029394161.1  neurofascin isoform X18

    Related
    MGP_PahariEiJ_P0075135, MGP_PahariEiJ_T0075135.1
    Conserved Domains (5) summary
    cd05875
    Location:155 → 231
    Ig_hNeurofascin_like; Immunoglobulin (Ig)-like domain of human neurofascin (NF)
    cd00063
    Location:724 → 814
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:545 → 611
    Ig; Immunoglobulin domain
    cd05731
    Location:360 → 430
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cl11960
    Location:236 → 328
    Ig; Immunoglobulin domain
Nucleotide Protein
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