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SERINC3 serine incorporator 3 [ Homo sapiens (human) ]

Gene ID: 10955, updated on 24-Nov-2020

Summary

Official Symbol
SERINC3provided by HGNC
Official Full Name
serine incorporator 3provided by HGNC
Primary source
HGNC:HGNC:11699
See related
Ensembl:ENSG00000132824 MIM:607165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TDE; TDE1; AIGP1; TMS-1; DIFF33; SBBI99
Expression
Ubiquitous expression in brain (RPKM 33.6), testis (RPKM 32.1) and 25 other tissues See more
Orthologs

Genomic context

See SERINC3 in Genome Data Viewer
Location:
20q13.12
Exon count:
11
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (44496221..44522070, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (43124864..43150726, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37a pseudogene 1 Neighboring gene alpha tocopherol transfer protein like Neighboring gene Sharpr-MPRA regulatory region 7879 Neighboring gene cAMP-dependent protein kinase inhibitor gamma Neighboring gene adenosine deaminase intronic regulatory elements Neighboring gene adenosine deaminase Neighboring gene proximal ADA Alu-mediated recombination region

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.
GeneReviews: Not available
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
GeneReviews: Not available

HIV-1 interactions

Replication interactions

Interaction Pubs
HIV-1 infection (VSV-G pseudotyped) of CEMT4 T cells downregulates plasma membrane expression of SERINC3 PubMed
HIV-1 Nef deleted virus replication is restricted by SERINC3 and SERINC5 (combined effect of SERINC3 and SERINC5 noted) PubMed
HIV-1 Nef deleted virus is restricted by SERINC3; CRISPR-Cas9 knockout of SERINC3 in cells producing HIV-1 Nef deleted virus enhances infectivity HIV-1 Nef deleted virus of subsequent target cells PubMed

Protein interactions

Protein Gene Interaction Pubs
Nef nef HIV-1 Nef counteracts restriction of HIV-1 replication by SERINC3 and SERINC5 PubMed
nef HIV-1 Nef downregulates SERINC3 expression on the cell surfacem, which in turn, prevents incorporation into virions to an extent that correlates with infectivity enhancement PubMed
nef HIV-1 Nef downregulates cell (CEMT4) surface expression of SERINC3 PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
L-serine biosynthetic process TAS
Traceable Author Statement
more info
 
defense response to virus IDA
Inferred from Direct Assay
more info
PubMed 
detection of virus IDA
Inferred from Direct Assay
more info
PubMed 
innate immune response IDA
Inferred from Direct Assay
more info
PubMed 
phosphatidylserine metabolic process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 
sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
viral process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
serine incorporator 3
Names
tumor differentially expressed protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006811.4NP_006802.1  serine incorporator 3 precursor

    See identical proteins and their annotated locations for NP_006802.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AA294859, AA772607, AF112227, BI599912, CA950523, CB956722, CN369494, DA978982, Z97053
    Consensus CDS
    CCDS13333.1
    UniProtKB/Swiss-Prot
    Q13530
    Related
    ENSP00000340243.4, ENST00000342374.5
    Conserved Domains (1) summary
    pfam03348
    Location:16471
    Serinc; Serine incorporator (Serinc)
  2. NM_198941.3NP_945179.1  serine incorporator 3 precursor

    See identical proteins and their annotated locations for NP_945179.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AA294859, AF112227, BF061792, BU739133, CB956722
    Consensus CDS
    CCDS13333.1
    UniProtKB/Swiss-Prot
    Q13530
    Related
    ENSP00000255175.1, ENST00000255175.5
    Conserved Domains (1) summary
    pfam03348
    Location:16471
    Serinc; Serine incorporator (Serinc)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    44496221..44522070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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