U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

setdb1 SET domain bifurcated histone lysine methyltransferase 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109522778, updated on 25-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
setdb1
Gene description
SET domain bifurcated histone lysine methyltransferase 1
See related
Ensembl:ENSHCOG00000014567
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805630.1 (404214..415650, complement)

NW_017805630.1Genomic Context describing neighboring genes Neighboring gene dual specificity protein kinase CLK2-like Neighboring gene REC8 meiotic recombination protein Neighboring gene aryl hydrocarbon receptor nuclear translocator Neighboring gene ceramide synthase 2b

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017805630.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
histone-lysine N-methyltransferase SETDB1
Names
SET domain bifurcated 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805630.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    404214..415650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019881567.1 → XP_019737126.1  histone-lysine N-methyltransferase SETDB1

    UniProtKB/TrEMBL
    A0A3Q2Z036
    Related
    ENSHCOP00000024875.1, ENSHCOT00000018502.1
    Conserved Domains (5) summary
    smart00468
    Location:715 → 822
    PreSET; N-terminal to some SET domains
    smart00333
    Location:390 → 441
    TUDOR; Tudor domain
    smart00317
    Location:1157 → 1219
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd01395
    Location:635 → 696
    HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
    cl26464
    Location:484 → 603
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.