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C11orf58 chromosome 11 open reading frame 58 [ Homo sapiens (human) ]

Gene ID: 10944, updated on 21-Dec-2019

Summary

Official Symbol
C11orf58provided by HGNC
Official Full Name
chromosome 11 open reading frame 58provided by HGNC
Primary source
HGNC:HGNC:16990
See related
Ensembl:ENSG00000110696
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMAP; IMAGE145052
Expression
Ubiquitous expression in thyroid (RPKM 25.7), endometrium (RPKM 22.9) and 25 other tissues See more
Orthologs

Genomic context

See C11orf58 in Genome Data Viewer
Location:
11p15.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (16738647..16758340)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (16760148..16779901)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 6 Neighboring gene uncharacterized LOC105376571 Neighboring gene RNA, 7SL, cytoplasmic 188, pseudogene Neighboring gene pleckstrin homology domain containing A7 Neighboring gene VISTA enhancer hs2096 Neighboring gene RN7SK pseudogene 90

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117265, DKFZp686N0232

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014267.6NP_055082.1  small acidic protein

    See identical proteins and their annotated locations for NP_055082.1

    Status: VALIDATED

    Source sequence(s)
    AC026639
    Consensus CDS
    CCDS7822.1
    UniProtKB/Swiss-Prot
    O00193
    Related
    ENSP00000228136.4, ENST00000228136.9
    Conserved Domains (1) summary
    pfam15477
    Location:27103
    SMAP; Small acidic protein family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    16738647..16758340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017017143.2XP_016872632.1  small acidic protein isoform X1

    Conserved Domains (1) summary
    pfam15477
    Location:159
    SMAP; Small acidic protein family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001142705.1: Suppressed sequence

    Description
    NM_001142705.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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