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hoxa9.L homeobox A9 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108718902, updated on 18-Sep-2024

Summary

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Official Symbol
hoxa9.L
Official Full Name
homeobox A9 L homeolog
Primary source
Xenbase:XB-GENE-17331109
Locus tag
XELAEV_18030994mg
See related
EnsemblRapid:ENSXLAG00005012546
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
xhoxa9; XlHbox6; hoxa9-A; XlHbox-6
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Genomic context

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Location:
chromosome: 6L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (43441946..43448187, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (39644643..39649532, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene homeobox A3 L homeolog Neighboring gene uncharacterized LOC121394578 Neighboring gene homeobox A6 L homeolog Neighboring gene homeobox A7 L homeolog Neighboring gene homeobox protein Hox-A10 Neighboring gene homeobox A11 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homeobox protein Hox-A9
Names
XIHbox 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    43441946..43448187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018267416.2 → XP_018122905.1  homeobox protein Hox-A9

    UniProtKB/TrEMBL
    A0A1L8FW54, A0A974CP47
    Related
    ENSXLAP00005036796.1, ENSXLAT00005037705.1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases