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rubcn.L RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108704678, updated on 11-Apr-2024

Summary

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Official Symbol
rubcn.L
Official Full Name
RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein L homeolog
Primary source
Xenbase:XB-GENE-6486221
Locus tag
XELAEV_18003278mg
See related
EnsemblRapid:ENSXLAG00005015101
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See rubcn.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (108309091..108363589)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694835.1 (1380000..1434615)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, nicotinic gamma L homeolog Neighboring gene eukaryotic translation initiation factor 4E family member 2 L homeolog Neighboring gene CPD photolyase-like L homeolog Neighboring gene uncharacterized LOC121393785

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in late endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
run domain Beclin-1-interacting and cysteine-rich domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    108309091..108363589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041563239.1 → XP_041419173.1  run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8J1KR01
    Related
    ENSXLAP00005044289.1, ENSXLAT00005045361.1
    Conserved Domains (1) summary
    smart00593
    Location:105 → 165
    RUN; domain involved in Ras-like GTPase signaling

  2. XM_018241358.2 → XP_018096847.1  run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0U5Y7
    Conserved Domains (2) summary
    smart00593
    Location:105 → 165
    RUN; domain involved in Ras-like GTPase signaling
    pfam13901
    Location:679 → 875
    zf-RING_9; Putative zinc-RING and/or ribbon

  3. XM_018241360.2 → XP_018096849.1  run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8J0U5C4
    Related
    ENSXLAP00005044294.1, ENSXLAT00005045366.1

  4. XM_018241359.2 → XP_018096848.1  run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0U5Y7
    Related
    ENSXLAP00005044281.1, ENSXLAT00005045353.1
    Conserved Domains (2) summary
    smart00593
    Location:105 → 165
    RUN; domain involved in Ras-like GTPase signaling
    pfam13901
    Location:679 → 875
    zf-RING_9; Putative zinc-RING and/or ribbon

  5. XM_041563238.1 → XP_041419172.1  run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0U5Y7
    Related
    ENSXLAP00005044278.1, ENSXLAT00005045351.1
    Conserved Domains (2) summary
    smart00593
    Location:105 → 165
    RUN; domain involved in Ras-like GTPase signaling
    pfam13901
    Location:679 → 875
    zf-RING_9; Putative zinc-RING and/or ribbon
Nucleotide Protein Strain
Heading Accession and Version

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