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Slc35b3 solute carrier family 35, member B3 [ Mus musculus (house mouse) ]

Gene ID: 108652, updated on 6-Jun-2024

Summary

Official Symbol
Slc35b3provided by MGI
Official Full Name
solute carrier family 35, member B3provided by MGI
Primary source
MGI:MGI:1913978
See related
Ensembl:ENSMUSG00000021432 AllianceGenome:MGI:1913978
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CGI-19; PABST2; PAPST2; 4921526O06Rik
Summary
Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to be involved in transmembrane transport. Located in mitochondrion. Is expressed in cerebral cortex ventricular layer; cortical plate; and embryo. Orthologous to human SLC35B3 (solute carrier family 35 member B3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 7.6), limb E14.5 (RPKM 6.2) and 28 other tissues See more
Orthologs
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Genomic context

See Slc35b3 in Genome Data Viewer
Location:
13 A3.3; 13 18.61 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (39116112..39144855, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (38932132..38960879, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_34252 Neighboring gene DNA polymerase epsilon subunit 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_34253 Neighboring gene STARR-seq mESC enhancer starr_34254 Neighboring gene STARR-seq mESC enhancer starr_34255 Neighboring gene STARR-seq mESC enhancer starr_34256 Neighboring gene predicted gene, 46392 Neighboring gene RIKEN cDNA 5033403F01 gene Neighboring gene STARR-seq mESC enhancer starr_34258 Neighboring gene STARR-seq mESC enhancer starr_34259 Neighboring gene STARR-seq mESC enhancer starr_34260 Neighboring gene STARR-seq mESC enhancer starr_34261 Neighboring gene STARR-seq mESC enhancer starr_34262 Neighboring gene predicted gene 3509 Neighboring gene STARR-seq mESC enhancer starr_34265 Neighboring gene predicted gene, 32243

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Gene trapped (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in 3'-phosphoadenosine 5'-phosphosulfate transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion HDA PubMed 

General protein information

Preferred Names
adenosine 3'-phospho 5'-phosphosulfate transporter 2
Names
PAPS transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170430.2NP_001163901.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1

    See identical proteins and their annotated locations for NP_001163901.1

    Status: VALIDATED

    Source sequence(s)
    AC125223
    Consensus CDS
    CCDS26466.1
    UniProtKB/Swiss-Prot
    Q922Q5
    UniProtKB/TrEMBL
    F8WGD7
    Related
    ENSMUSP00000126016.2, ENSMUST00000167513.3
    Conserved Domains (1) summary
    pfam08449
    Location:48339
    UAA; UAA transporter family
  2. NM_001170431.3NP_001163902.2  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC125223
    Consensus CDS
    CCDS26466.1
    UniProtKB/Swiss-Prot
    Q922Q5
    UniProtKB/TrEMBL
    F8WGD7
    Related
    ENSMUSP00000021870.5, ENSMUST00000021870.12
    Conserved Domains (1) summary
    pfam08449
    Location:48339
    UAA; UAA transporter family
  3. NM_001403012.1NP_001389941.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/TrEMBL
    F8WGD7
  4. NM_001403013.1NP_001389942.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/TrEMBL
    F8WGD7
  5. NM_001403014.1NP_001389943.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/TrEMBL
    F8WGD7
  6. NM_001403015.1NP_001389944.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/TrEMBL
    F8WGD7
  7. NM_001403016.1NP_001389945.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/Swiss-Prot
    Q922Q5
    UniProtKB/TrEMBL
    F8WGD7
  8. NM_001403017.1NP_001389946.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC125223
    UniProtKB/TrEMBL
    A0A286YDN3
  9. NM_134060.5NP_598821.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1

    See identical proteins and their annotated locations for NP_598821.1

    Status: VALIDATED

    Source sequence(s)
    AC125223
    Consensus CDS
    CCDS26466.1
    UniProtKB/Swiss-Prot
    Q922Q5
    UniProtKB/TrEMBL
    F8WGD7
    Related
    ENSMUSP00000153046.2, ENSMUST00000225432.2
    Conserved Domains (1) summary
    pfam08449
    Location:48339
    UAA; UAA transporter family

RNA

  1. NR_175328.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125223
  2. NR_175329.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125223
  3. NR_175330.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125223

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    39116112..39144855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247124.1XP_030102984.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X5

    Conserved Domains (1) summary
    pfam08449
    Location:92161
    UAA; UAA transporter family

RNA

  1. XR_003950408.2 RNA Sequence

  2. XR_001780746.3 RNA Sequence

  3. XR_004937924.1 RNA Sequence

  4. XR_001780745.3 RNA Sequence

  5. XR_004937925.1 RNA Sequence

  6. XR_003950410.1 RNA Sequence