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akap1b A kinase (PRKA) anchor protein 1b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278245, updated on 14-Mar-2024

Summary

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Gene symbol
akap1b
Gene description
A kinase (PRKA) anchor protein 1b
See related
Ensembl:ENSIPUG00000003688
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
AKAP1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 17 NC_030432.2 (12836016..12855567, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 17 NC_030432.1 (14556747..14576278)

Chromosome 17 - NC_030432.2Genomic Context describing neighboring genes Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene musashi RNA-binding protein 2b Neighboring gene uncharacterized LOC108277819 Neighboring gene protein EVI2B Neighboring gene neurofibromin 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A kinase (PRKA) anchor protein 1b
Names
A-kinase anchor protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030432.2 Reference Coco_2.0 Primary Assembly

    Range
    12836016..12855567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017491462.3 → XP_017346951.1  A kinase (PRKA) anchor protein 1b

    UniProtKB/TrEMBL
    A0A2D0SWP8, W5UCJ7
    Related
    ENSIPUP00000005293.1
Nucleotide Protein
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