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CTSD cathepsin D [ Parus major (Great Tit) ]

Gene ID: 107206041, updated on 14-Mar-2024

Summary

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Gene symbol
CTSD
Gene description
cathepsin D
See related
Ensembl:ENSPMJG00000009393
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 5 NC_031774.1 (15540992..15556970)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 5 NC_029274.1 (15540992..15556745)

Chromosome 5 - NC_031774.1Genomic Context describing neighboring genes Neighboring gene cytosolic 5'-nucleotidase 1A-like Neighboring gene synaptotagmin 8 Neighboring gene interferon induced transmembrane protein 10 Neighboring gene dual specificity phosphatase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031774.1 Reference Parus_major1.1 Primary Assembly

    Range
    15540992..15556970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033514901.1 → XP_033370792.1  cathepsin D isoform X1

    Related
    ENSPMJP00000012175.1, ENSPMJT00000016035.1
    Conserved Domains (2) summary
    pfam07966
    Location:20 → 38
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:70 → 343
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

  2. XM_015631353.1 → XP_015486839.1  cathepsin D isoform X2

    Related
    ENSPMJP00000012171.1, ENSPMJT00000016031.1
    Conserved Domains (3) summary
    pfam00026
    Location:75 → 394
    Asp; Eukaryotic aspartyl protease
    pfam07966
    Location:20 → 38
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:70 → 394
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
Nucleotide Protein
Heading Accession and Version

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