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aplf aprataxin and PNKP like factor [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107094925, updated on 14-Mar-2024

Summary

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Gene symbol
aplf
Gene description
aprataxin and PNKP like factor
See related
Ensembl:ENSCVAG00000012593
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150968.1 (575067..597602, complement)

NW_015150968.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptide B2 Neighboring gene prokineticin receptor 1a Neighboring gene F-box protein 48 Neighboring gene cannabinoid receptor interacting protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150968.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aprataxin and PNK-like factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150968.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    575067..597602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015390837.1 → XP_015246323.1  aprataxin and PNK-like factor

    UniProtKB/TrEMBL
    A0A3Q2CX40
    Related
    ENSCVAP00000010461.1, ENSCVAT00000017163.1
    Conserved Domains (2) summary
    cd00060
    Location:11 → 100
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    pfam10283
    Location:347 → 368
    zf-CCHH; Zinc-finger (CX5CX6HX5H) motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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