U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fancl FA complementation group L [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107081766, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
fancl
Gene description
FA complementation group L
See related
Ensembl:ENSCVAG00000017100
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150493.1 (561540..589706, complement)

NW_015150493.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor receptor 2 Neighboring gene WD repeat domain 11 Neighboring gene uncharacterized LOC107081751 Neighboring gene VRK serine/threonine kinase 2 Neighboring gene BCL11 transcription factor A a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015150493.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Fanconi anaemia nuclear complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase FANCL
Names
Fanconi anemia complementation group L

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150493.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    561540..589706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015370003.1 → XP_015225489.1  E3 ubiquitin-protein ligase FANCL

    UniProtKB/TrEMBL
    A0A3Q2D738
    Related
    ENSCVAP00000014466.1, ENSCVAT00000022308.1
    Conserved Domains (2) summary
    pfam09765
    Location:12 → 291
    WD-3; WD-repeat region
    pfam11793
    Location:299 → 367
    FANCL_C; FANCL C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.