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zrsr2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106952017, updated on 13-Mar-2024

Summary

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Gene symbol
zrsr2
Gene description
zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2
See related
Ensembl:ENSPLAG00000019869
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113104.1 (283966..288969, complement)

NW_015113104.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase, EF-hand calcium binding domain 1 Neighboring gene fibrillin-1-like Neighboring gene phosphorylase kinase, alpha 2 (liver) Neighboring gene adaptor related protein complex 1 subunit sigma 2 Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene BTB domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113104.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2AF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2
Names
zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113104.1 Reference P_latipinna-1.0

    Range
    283966..288969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015039861.1 → XP_014895347.1  U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3VXR5
    Related
    ENSPLAP00000029549.1, ENSPLAT00000030832.1
    Conserved Domains (2) summary
    cd12540
    Location:203 → 307
    RRM_U2AFBPL; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (U2AFBPL) and similar proteins
    pfam00642
    Location:172 → 195
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_015039862.1 → XP_014895348.1  U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 isoform X2

    Conserved Domains (2) summary
    cd12540
    Location:98 → 202
    RRM_U2AFBPL; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (U2AFBPL) and similar proteins
    pfam00642
    Location:67 → 90
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
Heading Accession and Version

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