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polr2a RNA polymerase II subunit A [ Poecilia mexicana ]

Gene ID: 106919136, updated on 13-Mar-2024

Summary

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Gene symbol
polr2a
Gene description
RNA polymerase II subunit A
See related
Ensembl:ENSPMEG00000002071
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094853.1 (239227..252965, complement)

NW_015094853.1Genomic Context describing neighboring genes Neighboring gene nuclear factor 7, ovary-like Neighboring gene capping protein (actin filament), gelsolin-like b Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene sex hormone-binding globulin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094853.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB1
Names
polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094853.1 Reference P_mexicana-1.0

    Range
    239227..252965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014989321.1 → XP_014844807.1  DNA-directed RNA polymerase II subunit RPB1

    UniProtKB/TrEMBL
    A0A3B3WEE7, A0A3B3WEF6
    Related
    ENSPMEP00000001178.1, ENSPMET00000014643.1
    Conserved Domains (7) summary
    cd02584
    Location:1056 → 1474
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    smart01104
    Location:1513 → 1612
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    PRK08566
    Location:16 → 893
    PRK08566; DNA-directed RNA polymerase subunit A'; Validated
    pfam08430
    Location:1506 → 1600
    Forkhead_N; Forkhead N-terminal region
    cd02733
    Location:17 → 874
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam04992
    Location:894 → 1077
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    pfam04998
    Location:828 → 1426
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
Nucleotide Protein
Heading Accession and Version

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