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CACNA1C calcium voltage-gated channel subunit alpha1 C [ Equus asinus (ass) ]

Gene ID: 106839455, updated on 13-Mar-2024

Summary

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Gene symbol
CACNA1C
Gene description
calcium voltage-gated channel subunit alpha1 C
See related
Ensembl:ENSEASG00005005727
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CACNA1C in Genome Data Viewer
Location:
chromosome: 22
Exon count:
51
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 22 NC_052198.1 (28313668..28912652, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638098.1 (741853..977658)

Chromosome 22 - NC_052198.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123279832 Neighboring gene uncharacterized LOC123279831 Neighboring gene interleukin 17 receptor A Neighboring gene uncharacterized LOC123279829 Neighboring gene uncharacterized LOC123279830 Neighboring gene 40S ribosomal protein S12-like Neighboring gene decapping mRNA 1B Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene leucine rich repeats and transmembrane domains 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052198.1 Reference ASM1607732v2

    Range
    28313668..28912652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044755842.1 → XP_044611777.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X11

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1608 → 1638
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  2. XM_044755833.1 → XP_044611768.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X2

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1636 → 1666
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  3. XM_044755840.1 → XP_044611775.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X9

    UniProtKB/TrEMBL
    A0A8C4LK95
    Conserved Domains (4) summary
    pfam00520
    Location:1218 → 1487
    Ion_trans; Ion transport protein
    pfam08763
    Location:1560 → 1631
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1653 → 2085
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1496 → 1549
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_044755838.1 → XP_044611773.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X7

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (4) summary
    pfam00520
    Location:1218 → 1487
    Ion_trans; Ion transport protein
    pfam08763
    Location:1560 → 1631
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1653 → 2085
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1496 → 1549
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  5. XM_044755834.1 → XP_044611769.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X3

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1635 → 1665
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  6. XM_044755843.1 → XP_044611778.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X12

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1607 → 1637
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  7. XM_044755836.1 → XP_044611771.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X5

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1632 → 1662
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  8. XM_044755835.1 → XP_044611770.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X4

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (1) summary
    smart01062
    Location:1633 → 1663
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  9. XM_044755844.1 → XP_044611779.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X13

    UniProtKB/TrEMBL
    A0A8C4LK95, A0A8C4LNC5
    Related
    ENSEASP00005011965.2, ENSEAST00005013001.2
    Conserved Domains (4) summary
    pfam00520
    Location:123 → 416
    Ion_trans; Ion transport protein
    pfam08763
    Location:1608 → 1679
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1701 → 2133
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1544 → 1597
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  10. XM_044755832.1 → XP_044611767.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X1

    UniProtKB/TrEMBL
    A0A8C4LJE1, A0A8C4LJR4
    Related
    ENSEASP00005011742.2, ENSEAST00005012761.2
    Conserved Domains (1) summary
    smart01062
    Location:1636 → 1666
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

  11. XM_044755841.1 → XP_044611776.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X10

    UniProtKB/TrEMBL
    A0A8C4LK95
    Related
    ENSEASP00005012063.2, ENSEAST00005013105.2
    Conserved Domains (4) summary
    pfam00520
    Location:1218 → 1485
    Ion_trans; Ion transport protein
    pfam08763
    Location:1558 → 1629
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1651 → 2083
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1494 → 1547
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  12. XM_044755839.1 → XP_044611774.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X8

    UniProtKB/TrEMBL
    A0A8C4LK95, A0A8C4PKJ7
    Related
    ENSEASP00005011974.2, ENSEAST00005013010.2
    Conserved Domains (4) summary
    pfam00520
    Location:1218 → 1487
    Ion_trans; Ion transport protein
    pfam08763
    Location:1560 → 1631
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1653 → 2085
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1496 → 1549
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  13. XM_044755837.1 → XP_044611772.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X6

    UniProtKB/TrEMBL
    A0A8C4LJE1
    Conserved Domains (4) summary
    pfam00520
    Location:123 → 416
    Ion_trans; Ion transport protein
    pfam08763
    Location:1560 → 1631
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1653 → 2085
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1496 → 1549
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
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