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LOC106589042 CCN family member 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106589042, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106589042
Gene description
CCN family member 2-like
See related
Ensembl:ENSSSAG00000044477
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa27
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa27 NC_059468.1 (37500595..37505659, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa27 NC_027326.1 (36716042..36724440, complement)

Chromosome ssa27 - NC_059468.1Genomic Context describing neighboring genes Neighboring gene protein 4.1 Neighboring gene uncharacterized LOC123730974 Neighboring gene syntaxin-12-like Neighboring gene tRNA selenocysteine 1-associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCN family member 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059468.1 Reference Ssal_v3.1

    Range
    37500595..37505659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014178704.2 → XP_014034179.1  CCN family member 2-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3Q442
    Related
    ENSSSAP00000165908.1, ENSSSAT00000175560.1
    Conserved Domains (3) summary
    smart00214
    Location:97 → 156
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:40 → 76
    IGFBP; Insulin-like growth factor binding protein
    cl21545
    Location:270 → 339
    GHB_like; Glycoprotein hormone beta chain homologues

  2. XM_014178705.2 → XP_014034180.1  CCN family member 2-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3Q2J4
    Conserved Domains (3) summary
    smart00214
    Location:97 → 156
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:40 → 76
    IGFBP; Insulin-like growth factor binding protein
    cl21545
    Location:256 → 325
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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