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LOC106587353 zinc finger protein 821-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106587353, updated on 3-Apr-2024

Summary

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Gene symbol
LOC106587353
Gene description
zinc finger protein 821-like
See related
Ensembl:ENSSSAG00000081179
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa26
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa26 NC_059467.1 (20436953..20459537)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa26 NC_027325.1 (21643427..21665905)

Chromosome ssa26 - NC_059467.1Genomic Context describing neighboring genes Neighboring gene MARVEL domain-containing protein 3 Neighboring gene PH domain leucine-rich repeat-containing protein phosphatase 2-like Neighboring gene AP-1 complex subunit gamma-1 Neighboring gene ataxin 1-like Neighboring gene myotubularin-related protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 821-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059467.1 Reference Ssal_v3.1

    Range
    20436953..20459537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014175694.2 → XP_014031169.1  zinc finger protein 821-like isoform X6

    UniProtKB/TrEMBL
    A0A1S3PU02, A0A1S3PVC2
    Conserved Domains (3) summary
    sd00017
    Location:68 → 88
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:68 → 120
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:303 → 416
    TPH; Trichohyalin-plectin-homology domain

  2. XM_014175692.2 → XP_014031167.1  zinc finger protein 821-like isoform X5

    UniProtKB/TrEMBL
    A0A1S3PU09, A0A1S3PVC2
    Conserved Domains (3) summary
    sd00017
    Location:72 → 92
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:72 → 124
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:307 → 420
    TPH; Trichohyalin-plectin-homology domain

  3. XM_014175689.2 → XP_014031164.1  zinc finger protein 821-like isoform X4

    UniProtKB/TrEMBL
    A0A1S3PTZ1, A0A1S3PVC7
    Conserved Domains (2) summary
    sd00017
    Location:73 → 93
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:73 → 125
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding

  4. XM_014175686.2 → XP_014031161.1  zinc finger protein 821-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3PU24, A0A1S3PVC2
    Related
    ENSSSAP00000161464.1, ENSSSAT00000231967.1
    Conserved Domains (2) summary
    sd00017
    Location:101 → 121
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:101 → 153
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding

  5. XM_014175695.2 → XP_014031170.1  zinc finger protein 821-like isoform X6

    UniProtKB/TrEMBL
    A0A1S3PU02, A0A1S3PVC2
    Related
    ENSSSAP00000165179.1, ENSSSAT00000241712.1
    Conserved Domains (3) summary
    sd00017
    Location:68 → 88
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:68 → 120
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:303 → 416
    TPH; Trichohyalin-plectin-homology domain

  6. XM_014175693.2 → XP_014031168.1  zinc finger protein 821-like isoform X6

    UniProtKB/TrEMBL
    A0A1S3PU02, A0A1S3PVC2
    Conserved Domains (3) summary
    sd00017
    Location:68 → 88
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:68 → 120
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:303 → 416
    TPH; Trichohyalin-plectin-homology domain

  7. XM_045708610.1 → XP_045564566.1  zinc finger protein 821-like isoform X5

    UniProtKB/TrEMBL
    A0A1S3PU09
    Conserved Domains (3) summary
    sd00017
    Location:72 → 92
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:72 → 124
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:307 → 420
    TPH; Trichohyalin-plectin-homology domain

  8. XM_014175685.2 → XP_014031160.1  zinc finger protein 821-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3PTZ1, A0A1S3PTZ2
    Related
    ENSSSAP00000119538.1, ENSSSAT00000154853.2
    Conserved Domains (3) summary
    sd00017
    Location:102 → 122
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:102 → 154
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam10252
    Location:384 → 439
    PP28; Casein kinase substrate phosphoprotein PP28

  9. XM_014175690.2 → XP_014031165.1  zinc finger protein 821-like isoform X4

    UniProtKB/TrEMBL
    A0A1S3PTZ1, A0A1S3PVC7
    Conserved Domains (2) summary
    sd00017
    Location:73 → 93
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:73 → 125
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding

  10. XM_045708611.1 → XP_045564567.1  zinc finger protein 821-like isoform X6

    UniProtKB/TrEMBL
    A0A1S3PU02
    Conserved Domains (3) summary
    sd00017
    Location:68 → 88
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:68 → 120
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:303 → 416
    TPH; Trichohyalin-plectin-homology domain

  11. XM_045708609.1 → XP_045564565.1  zinc finger protein 821-like isoform X3

    UniProtKB/TrEMBL
    A0A1S3PTZ7
    Related
    ENSSSAP00000128692.1, ENSSSAT00000247569.1
    Conserved Domains (3) summary
    sd00017
    Location:96 → 116
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05605
    Location:96 → 148
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13868
    Location:331 → 444
    TPH; Trichohyalin-plectin-homology domain
Nucleotide Protein
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